JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPT1B_chr22_50563861_50583427	0/0	a0013	772	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1C_chr19_49686116_49718731	1/1	a0001	803	331	82	64	124	14	45	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	a0002	328	16	2	7	6	0	1	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	a0003	328	1	1	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	a0004	803	1	1	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	a0005	803	1	0	1	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT2_chr1_53191824_53219197	1/0	a0001	658	217	80	42	58	7	29	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/1	a0002	658	85	7	12	57	4	4	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0003	658	40	1	3	36	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0004	658	34	2	7	22	0	3	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0005	658	2	2	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0006	658	2	0	2	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0007	648	1	1	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0008	658	1	0	1	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0009	658	1	0	0	1	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0010	658	1	0	0	0	1	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0011	658	1	0	1	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	a0012	658	1	1	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPTP_chr1_1319802_1333896	1/1	a0001	214	369	90	71	146	16	44	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0002	214	3	0	0	3	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0003	214	2	2	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0004	214	1	0	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0005	214	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0006	214	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	a0007	214	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPVL_chr7_28990235_29151537	1/0	a0001	476	128	42	18	49	3	15	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/1	a0002	476	73	21	15	24	3	9	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0003	476	63	13	8	32	2	8	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0004	476	8	0	3	2	1	2	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0005	476	2	0	1	0	1	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0006	476	2	2	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0007	476	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0008	476	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0009	476	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0010	415	1	0	0	1	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0011	476	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	a0012	476	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPXCR1_chrX_88742225_88759781	0/1	a0001	301	235	60	42	113	5	14	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	a0002	301	39	11	9	6	4	9	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	1/0	a0003	301	30	3	5	15	2	4	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	a0004	301	1	1	0	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	a0005	301	1	1	0	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	a0006	301	1	0	0	0	0	1	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	a0007	301	1	0	1	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXM1_chr20_2789074_2805627	1/1	a0001	734	436	94	82	195	14	49	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0002	734	6	0	0	6	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0003	734	4	4	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0004	734	2	2	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0005	734	1	0	0	0	0	1	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0006	734	1	0	1	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627