JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPXM1_chr20_2789074_2805627	0/0	a0007	734	1	0	0	0	1	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0008	734	1	0	0	0	1	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0009	734	1	0	1	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	a0010	734	1	0	0	1	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM2_chr10_123740639_123896807	0/1	a0001	756	257	66	52	93	12	33	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0002	756	11	11	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	1/0	a0003	756	4	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0004	756	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0005	756	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0006	756	2	2	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0007	756	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0008	756	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0009	756	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0010	756	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0011	756	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0012	756	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0013	756	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	a0014	756	1	0	0	0	0	1	copy fasta	CPXM2	chr10	123740639	123896807
CPZ_chr4_8587765_8624752	0/0	a0000	0	1	0	0	0	1	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/1	a0001	652	265	33	59	142	5	25	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0002	652	43	14	3	14	3	9	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0003	652	37	3	11	16	5	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0004	652	36	36	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0005	652	21	1	3	7	3	7	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0006	652	4	4	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0007	652	4	3	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0008	652	3	0	0	3	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0009	652	3	0	3	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0010	652	2	0	0	2	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0011	652	2	0	2	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0012	652	2	2	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0013	652	2	0	0	2	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0014	652	2	0	0	0	0	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0015	652	2	0	1	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0016	652	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0017	652	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	1/0	a0018	652	1	0	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0019	652	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0020	652	1	0	0	0	1	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0021	652	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0022	652	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0023	652	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0024	652	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0025	652	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0026	652	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0027	652	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	a0028	652	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CP_chr3_149167497_149226829	0/1	a0001	1065	298	43	53	149	13	39	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	1/0	a0002	1065	47	32	4	0	5	5	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0003	1065	8	6	2	0	0	0	copy fasta	CP	chr3	149167497	149226829