JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CP_chr3_149167497_149226829	0/0	a0004	1065	5	0	2	0	0	3	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0005	1065	3	3	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0006	1065	3	2	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0007	1065	2	2	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0008	1065	1	0	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0009	1065	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0010	1065	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0011	1065	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0012	1065	1	0	0	0	0	1	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0013	1065	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0014	1065	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0015	1065	1	0	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0016	1065	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	a0017	1065	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CR1L_chr1_207640133_207728703	0/0	a0001	569	74	19	7	34	3	11	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0002	569	65	19	11	30	1	4	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0003	569	56	1	27	15	7	6	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0004	569	49	1	6	37	1	4	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/1	a0005	569	23	4	7	6	3	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0006	569	17	2	6	8	1	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	1/0	a0007	569	14	13	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0008	569	4	4	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0009	569	4	3	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0010	569	4	2	2	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0011	569	3	0	2	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0012	569	3	0	0	1	0	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0013	569	3	0	0	3	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0014	569	2	0	1	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0015	569	2	0	0	0	0	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0016	569	2	1	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0017	569	2	0	0	2	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0018	569	2	2	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0019	569	2	2	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0020	569	2	0	0	2	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0021	569	2	0	2	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0022	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0023	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0024	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0025	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0026	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0027	569	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0028	569	1	0	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0029	569	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0030	569	1	0	0	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0031	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	a0032	569	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1_chr1_207491157_207646765	0/0	a0001	2039	78	13	12	39	3	11	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0002	2039	49	4	13	22	4	6	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0003	2039	37	0	1	34	0	2	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0004	2039	29	0	0	23	0	6	copy fasta	CR1	chr1	207491157	207646765