JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CR1_chr1_207491157_207646765	0/1	a0005	2039	23	2	8	5	3	4	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0006	2039	14	14	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0007	2489	13	2	3	6	1	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0008	2039	12	4	2	5	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0009	2039	10	0	8	0	1	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0010	2039	8	8	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0011	2039	7	7	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0012	2039	5	1	3	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0013	2039	5	5	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0014	2039	4	3	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0015	2489	4	3	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0016	2039	4	0	2	0	0	2	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0017	2489	4	2	2	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0018	2039	4	0	0	4	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0019	2489	3	0	3	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0020	2039	2	0	1	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0021	2489	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0022	2489	2	0	1	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0023	2039	2	0	0	2	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0024	1589	2	1	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0025	2039	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0026	2039	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0027	2039	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	1/0	a0028	2489	2	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0029	2489	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0030	2039	2	0	0	2	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0031	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0032	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0033	1589	1	0	0	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0034	2489	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0035	2489	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0036	2489	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0037	2039	1	0	0	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0038	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0039	2489	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0040	1589	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0041	1589	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0042	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0043	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0044	2489	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0045	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0046	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0047	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0048	2039	1	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0049	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0050	1589	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0051	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0052	2039	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0053	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	a0054	2489	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765