Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS7_chr15_78754206_78816464	0/0	a0069	1685	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0070	1686	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0071	1686	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0072	1686	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0073	1686	1	1	0	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	a0074	1686	1	1	0	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS8_chr11_130399923_130433609	0/0	a0001	888	135	10	24	87	6	8	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	1/1	a0002	889	68	14	8	29	1	14	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0003	889	56	19	2	32	0	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0004	888	27	4	9	10	1	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0005	889	23	3	1	14	0	5	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0006	889	20	15	0	5	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0007	888	17	1	12	0	3	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0008	890	16	10	3	0	3	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0009	888	9	1	0	7	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0010	890	7	0	6	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0011	889	7	5	1	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0012	889	5	4	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0013	890	4	2	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0014	889	4	0	2	0	1	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0015	888	3	0	0	0	0	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0016	890	2	0	0	0	1	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0017	890	2	0	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0018	889	2	2	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0019	889	2	1	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0020	890	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0021	890	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0022	889	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0023	889	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0024	889	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0025	889	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0026	889	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0027	889	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0028	889	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0029	888	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0030	888	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0031	888	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0032	888	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0033	888	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	a0034	888	1	0	0	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS9_chr3_64510654_64693000	1/1	a0001	1935	166	52	24	70	6	12	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0002	1935	36	9	7	20	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0003	1935	25	12	2	10	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0004	1935	8	3	4	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0005	1935	5	0	0	5	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0006	1935	4	0	0	4	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0007	1935	4	0	1	3	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0008	1935	3	0	0	3	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0009	1935	3	3	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0010	1935	3	0	1	2	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000