JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CR1_chr1_207491157_207646765	0/0	a0055	2039	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR2_chr1_207449328_207494892	0/1	a0001	1092	240	33	36	144	6	20	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0002	1092	86	36	14	28	2	6	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0003	1092	10	10	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	1/0	a0004	1092	6	0	3	0	1	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0005	1092	5	0	0	5	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0006	1092	5	3	2	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0007	1092	3	0	0	3	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0008	1092	3	3	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0009	1092	2	0	0	0	0	2	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0010	1092	2	2	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0011	1092	2	2	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0012	1092	2	0	0	2	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0013	1092	1	0	0	1	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0014	1092	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0015	1092	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0016	1092	1	0	0	0	0	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0017	1092	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0018	1092	1	0	0	0	1	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0019	1092	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0020	1092	1	0	0	1	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0021	1092	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0022	1092	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0023	1092	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	a0024	1092	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CRABP1_chr15_78335353_78353225	1/1	a0001	137	457	96	76	215	18	50	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	a0002	137	3	0	0	3	0	0	copy fasta	CRABP1	chr15	78335353	78353225
CRABP2_chr1_156694606_156710583	1/1	a0001	138	436	98	78	196	16	46	copy fasta	CRABP2	chr1	156694606	156710583
CRACDL_chr2_98788846_98941225	1/1	a0001	962	263	57	58	109	7	30	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0002	962	24	4	0	18	0	2	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0003	962	11	0	6	2	1	2	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0004	962	7	7	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0005	962	4	4	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0006	962	2	1	1	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0007	962	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0008	962	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0009	962	1	0	1	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0010	962	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	a0011	962	1	0	0	1	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACD_chr4_56044098_56335609	0/0	a0001	1233	71	14	19	30	3	5	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0002	1233	49	8	14	18	3	6	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/1	a0003	1239	47	9	19	4	2	12	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0004	1233	23	0	1	17	0	5	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0005	1239	10	9	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0006	1233	7	6	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0007	1233	4	4	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	1/0	a0008	1233	3	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0009	1236	3	3	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0010	1233	3	1	1	0	1	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0011	1239	3	3	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609