JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRACD_chr4_56044098_56335609	0/0	a0012	1239	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0013	1236	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0014	1236	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0015	1233	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0016	1233	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0017	1233	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0018	1233	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0019	1236	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0020	1242	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0021	1233	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0022	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0023	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0024	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0025	1233	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0026	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0027	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0028	1233	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0029	1233	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0030	1233	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0031	1239	1	0	0	0	1	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0032	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	a0033	1233	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACR2A_chr12_3610328_3758109	1/0	a0001	731	197	51	35	83	6	21	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0002	731	36	3	8	20	0	5	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/1	a0003	731	16	4	8	1	0	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0004	731	11	4	2	3	0	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0005	731	9	1	2	6	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0006	731	8	2	1	1	2	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0007	731	4	1	1	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0008	731	4	4	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0009	731	3	0	1	1	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0010	731	3	2	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0011	731	3	1	0	1	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0012	731	3	0	1	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0013	731	2	0	0	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0014	731	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0015	731	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0016	731	2	0	0	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0017	731	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0018	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0019	731	1	0	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0020	731	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0021	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0022	731	1	0	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0023	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0024	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0025	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0026	731	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0027	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0028	731	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109