JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRACR2A_chr12_3610328_3758109	0/0	a0029	731	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	a0030	731	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2B_chr11_822919_836986	0/0	a0001	399	273	40	65	144	12	12	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	1/1	a0002	399	93	26	16	18	5	26	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0003	399	59	17	3	33	0	6	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0004	399	3	0	0	3	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0005	399	3	3	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0006	399	3	0	0	0	1	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0007	399	3	2	1	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0008	399	2	0	1	0	0	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0009	399	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0010	399	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0011	399	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0012	399	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0013	399	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0014	399	1	0	0	0	0	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0015	399	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0016	399	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	a0017	399	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRADD_chr12_93672375_93855756	1/1	a0001	199	243	75	49	86	2	29	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	a0002	199	3	3	0	0	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	a0003	199	1	0	0	0	0	1	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	a0004	199	1	0	1	0	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRAMP1_chr16_1607360_1682908	1/1	a0001	1269	311	77	50	150	6	26	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0002	1269	8	7	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0003	1269	5	0	0	5	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0004	1269	2	2	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0005	1269	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0006	1269	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0007	1269	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0008	1269	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0009	1269	1	0	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	a0010	1269	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAT_chr9_129089794_129115793	0/1	a0001	626	386	98	59	174	16	38	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0002	626	23	0	9	12	0	2	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0003	626	4	0	0	1	0	3	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	1/0	a0004	626	2	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0005	626	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0006	626	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0007	631	1	0	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0008	626	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	a0009	626	1	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRB1_chr1_197263252_197483455	1/1	a0001	1406	178	67	34	51	4	20	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0002	1406	3	0	0	3	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0003	1406	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0004	1406	1	0	0	1	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0005	1406	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0006	1406	1	0	0	1	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	a0007	1406	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB2_chr9_123351197_123383753	0/0	a0001	1285	214	48	33	104	4	25	copy fasta	CRB2	chr9	123351197	123383753