JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRB2_chr9_123351197_123383753	0/0	a0002	1285	106	9	20	57	7	13	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0003	1285	49	7	12	27	1	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0004	1285	18	15	0	3	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0005	1285	11	9	2	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0006	1285	4	4	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0007	1285	3	0	3	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0008	1285	3	0	2	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0009	1285	2	0	1	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0010	1285	2	0	0	0	0	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0011	1285	2	1	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0012	1285	2	0	1	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	1/0	a0013	1285	2	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0014	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0015	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0016	1285	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0017	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0018	1285	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0019	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0020	1285	1	0	0	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0021	1285	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0022	1285	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/1	a0023	1285	1	0	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0024	1285	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0025	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0026	1285	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	a0027	1285	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB3_chr19_6459271_6472221	1/1	a0001	120	389	95	68	158	18	48	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	a0002	120	1	1	0	0	0	0	copy fasta	CRB3	chr19	6459271	6472221
CRBN_chr3_3145011_3184691	1/1	a0001	442	375	91	68	158	12	44	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	a0002	442	1	1	0	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRCP_chr7_66109847_66159568	1/1	a0001	148	379	82	68	175	16	36	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	a0002	148	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCT1_chr1_152509482_152521008	1/1	a0001	99	370	74	67	174	16	37	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	a0002	99	36	8	11	12	0	5	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	a0003	99	13	12	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	a0004	105	11	4	0	7	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	a0005	99	1	0	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	a0006	99	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CREB1_chr2_207524962_207610988	1/1	a0001	327	308	94	60	96	16	40	copy fasta	CREB1	chr2	207524962	207610988
CREB3L1_chr11_46272662_46326409	1/1	a0001	519	259	74	44	88	16	35	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0002	519	21	2	4	15	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0003	519	12	12	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0004	519	6	0	5	1	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0005	519	3	3	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0006	519	1	0	0	0	0	1	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0007	519	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	a0008	519	1	0	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L2_chr7_137869979_138007086	0/1	a0001	519	186	61	33	70	6	15	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	a0002	520	51	21	6	21	0	3	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	1/0	a0003	520	38	1	18	8	3	7	copy fasta	CREB3L2	chr7	137869979	138007086