JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CREB3L2_chr7_137869979_138007086	0/0	a0004	519	10	4	3	1	1	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	a0005	520	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	a0006	520	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	a0007	519	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L3_chr19_4148631_4178054	1/1	a0001	461	392	96	80	156	12	46	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0002	461	4	0	0	4	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0003	321	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0004	461	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0005	461	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0006	461	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0007	461	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0008	461	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0009	461	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	a0010	461	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L4_chr1_153962902_153979359	1/1	a0001	395	268	68	38	117	9	34	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0002	395	107	9	22	63	1	12	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0003	395	3	2	1	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0004	395	3	0	1	0	2	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0005	395	2	2	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0006	395	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0007	395	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0008	395	2	2	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0009	395	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0010	395	1	0	0	1	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0011	395	1	1	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	a0012	395	1	0	0	1	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3_chr9_35727666_35741999	1/1	a0001	371	432	94	70	213	14	39	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	a0002	371	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	a0003	371	1	0	0	0	0	1	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	a0004	371	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	a0005	371	1	0	0	1	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB5_chr7_28407518_28830894	1/1	a0001	508	198	66	44	42	10	34	copy fasta	CREB5	chr7	28407518	28830894
CREBBP_chr16_3720054_3885713	1/1	a0001	2442	271	65	40	122	6	36	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0002	2442	4	0	0	4	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0003	2442	4	2	2	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0004	2442	3	3	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0005	2442	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0006	2442	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0007	2442	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	a0008	2442	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBL2_chr12_12606876_12650108	1/1	a0001	120	372	92	70	154	14	40	copy fasta	CREBL2	chr12	12606876	12650108
CREBRF_chr5_173051352_173144284	1/1	a0001	639	290	84	66	90	14	34	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	a0002	639	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	a0003	639	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBZF_chr11_85652990_85670129	1/1	a0001	354	387	89	72	171	16	37	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	a0002	354	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	a0003	354	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	a0004	354	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	a0005	354	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	a0006	354	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129