JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CREG1_chr1_167536013_167558762	1/1	a0001	220	415	93	80	174	18	48	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	a0002	220	2	2	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	a0003	220	1	1	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG2_chr2_101340550_101392503	1/0	a0001	290	357	83	65	162	12	34	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/1	a0002	290	24	10	9	0	0	4	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	a0003	290	5	5	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	a0004	290	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	a0005	290	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CRELD1_chr3_9928834_9950406	0/1	a0001	420	379	93	70	160	12	43	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0002	181	10	3	2	3	0	2	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0003	420	6	0	0	6	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	1/0	a0004	420	3	0	0	0	2	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0005	420	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0006	420	1	0	0	0	0	1	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0007	420	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	a0008	420	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD2_chr22_49913634_49932537	1/1	a0001	353	224	37	51	95	11	28	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0002	353	51	35	4	8	0	4	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0003	353	26	0	6	15	0	5	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0004	353	9	8	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0005	353	3	0	1	0	2	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0006	353	3	1	1	0	1	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0007	353	2	0	0	2	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0008	353	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0009	336	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0010	353	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0011	353	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0012	353	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	a0013	353	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CREM_chr10_35121846_35217953	1/1	a0001	299	292	79	54	102	14	41	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	a0002	299	1	1	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	a0003	299	1	0	0	0	0	1	copy fasta	CREM	chr10	35121846	35217953
CRHBP_chr5_76948045_76974471	1/1	a0001	322	413	94	78	185	14	40	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	a0002	322	2	0	0	0	0	2	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	a0003	322	1	0	0	1	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHR1_chr17_45779320_45840828	0/1	a0001	415	300	92	70	93	14	30	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	a0002	415	1	0	0	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR2_chr7_30646942_30687456	1/1	a0001	411	377	85	73	165	12	40	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0002	411	6	5	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0003	411	3	0	1	0	2	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0004	411	2	0	1	0	0	1	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0005	411	2	1	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0006	411	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0007	411	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0008	411	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0009	411	1	0	0	0	0	1	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0010	411	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0011	411	1	0	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0012	411	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0013	411	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456