JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRHR2_chr7_30646942_30687456	0/0	a0014	411	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	a0015	411	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRH_chr8_66171376_66183464	1/1	a0001	196	365	92	65	154	14	38	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	a0002	197	7	0	0	7	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	a0003	197	1	0	0	1	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	a0004	196	1	0	1	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRIM1_chr2_36350778_36556135	1/1	a0001	1036	291	87	60	99	11	32	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0002	1036	23	0	1	20	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0003	1036	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0004	1036	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0005	1036	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0006	1036	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0007	1036	1	0	0	0	1	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0008	1036	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0009	1036	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0010	1036	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	a0011	1036	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIP1_chr14_105481886_105493947	1/1	a0001	77	371	87	68	162	12	40	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	a0002	77	12	0	4	0	4	4	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	a0003	77	1	1	0	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP2_chr14_105469821_105485162	1/1	a0001	208	314	79	62	122	10	39	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	a0002	208	1	0	0	0	0	1	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	a0003	208	1	1	0	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP3_chr6_43300472_43313826	1/0	a0001	204	230	86	46	73	5	19	copy fasta	CRIP3	chr6	43300472	43313826
CRIP3_chr6_43300472_43313826	0/1	a0002	204	145	8	26	82	7	21	copy fasta	CRIP3	chr6	43300472	43313826
CRIP3_chr6_43300472_43313826	0/0	a0003	204	1	0	0	1	0	0	copy fasta	CRIP3	chr6	43300472	43313826
CRIPT_chr2_46612215_46635176	1/1	a0001	101	440	90	78	208	16	46	copy fasta	CRIPT	chr2	46612215	46635176
CRISP1_chr6_49829257_49871535	1/1	a0001	249	369	87	70	154	15	41	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	a0002	249	6	0	2	0	3	1	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	a0003	249	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	a0004	249	1	1	0	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	a0005	249	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP2_chr6_49687359_49718543	1/1	a0001	243	392	85	74	174	16	41	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0002	243	6	5	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0003	243	3	0	0	0	2	1	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0004	243	3	3	0	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0005	243	2	0	0	0	0	2	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0006	243	2	1	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0007	243	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	a0008	243	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP3_chr6_49722376_49749388	0/0	a0001	258	143	20	42	62	6	13	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	1/1	a0002	258	137	19	25	70	10	11	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0003	258	112	51	7	33	2	19	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0004	258	2	0	0	2	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0005	258	1	0	0	0	0	1	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0006	258	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0007	258	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0008	258	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0009	258	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	a0010	153	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388