JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRISPLD1_chr8_74979505_75039558	1/1	a0001	500	367	90	64	151	18	42	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	a0002	500	1	0	0	1	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD2_chr16_84814985_84914508	0/0	a0001	497	134	30	13	81	4	6	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	1/0	a0002	497	122	22	33	42	4	20	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0003	497	68	22	13	17	5	11	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/1	a0004	497	43	14	9	9	1	9	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0005	497	2	0	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0006	497	2	0	0	0	0	2	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0007	497	2	1	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0008	497	2	0	2	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0009	497	2	2	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0010	497	1	0	1	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0011	497	1	1	0	0	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	a0012	497	1	0	0	1	0	0	copy fasta	CRISPLD2	chr16	84814985	84914508
CRKL_chr22_20912407_20958747	1/1	a0001	303	369	87	64	162	16	38	copy fasta	CRKL	chr22	20912407	20958747
CRKL_chr22_20912407_20958747	0/0	a0002	303	1	1	0	0	0	0	copy fasta	CRKL	chr22	20912407	20958747
CRK_chr17_1415693_1461232	1/1	a0001	304	404	96	82	166	16	42	copy fasta	CRK	chr17	1415693	1461232
CRLF1_chr19_18588237_18611799	1/1	a0001	422	245	72	56	82	7	26	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	a0002	421	155	18	24	101	2	10	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	a0003	422	5	0	0	5	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	a0004	421	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	a0005	422	1	0	0	0	1	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF1_chr19_18588237_18611799	0/0	a0006	422	1	0	0	1	0	0	copy fasta	CRLF1	chr19	18588237	18611799
CRLF2_chrX_1185490_1217649	0/0	a0001	371	82	21	10	37	4	10	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	1/0	a0002	371	52	10	15	18	3	5	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0003	371	6	2	3	0	1	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0004	371	4	0	3	0	1	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0005	371	2	2	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/1	a0006	371	2	0	0	0	0	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0007	64	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0008	38	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0009	38	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0010	64	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0011	139	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0012	371	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0013	371	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0014	361	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0015	371	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0016	312	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0017	371	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0018	312	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0019	64	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0020	64	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0021	64	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0022	38	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0023	64	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0024	64	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	a0025	372	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF3_chr17_30777684_30829692	1/1	a0001	442	274	66	61	103	10	32	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	a0002	442	45	14	9	16	2	4	copy fasta	CRLF3	chr17	30777684	30829692