JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRLF3_chr17_30777684_30829692	0/0	a0003	442	3	0	0	3	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	a0004	442	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	a0005	442	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLS1_chr20_6001123_6045053	1/1	a0001	301	337	76	55	156	14	34	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	a0002	301	20	1	11	2	0	6	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	a0003	301	9	9	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRMP1_chr4_5815764_5898086	1/1	a0001	686	247	52	49	101	13	30	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0002	686	49	37	7	0	4	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0003	686	8	6	2	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0004	686	6	0	2	3	1	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0005	686	2	0	2	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0006	686	1	0	0	0	0	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	a0007	686	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRNKL1_chr20_20029368_20057466	1/1	a0001	687	416	83	66	205	16	44	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0002	687	7	7	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0003	687	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0004	687	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0005	680	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0006	687	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	a0007	687	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNN_chr1_152404243_152419263	1/1	a0001	495	217	46	39	103	5	22	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0002	495	130	10	32	79	1	8	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0003	495	23	23	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0004	495	10	10	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0005	495	3	3	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0006	495	2	2	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0007	495	2	0	2	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0008	495	1	0	1	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0009	495	1	0	0	1	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0010	495	1	0	0	1	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0011	495	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	a0012	495	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CROCC2_chr2_240901336_240998311	0/0	a0001	1653	60	19	11	25	0	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0002	1653	57	7	16	20	7	7	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0003	1653	28	7	6	5	5	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	1/0	a0004	1653	22	1	6	1	4	9	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0005	1653	19	3	7	4	0	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0006	1653	17	1	2	14	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0007	1653	17	0	1	13	0	3	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0008	1653	16	4	5	5	0	2	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0009	1653	15	1	1	13	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0010	1653	15	0	0	15	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0011	586	5	2	2	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0012	1653	5	5	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0013	1653	4	4	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0014	1653	4	4	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0015	1653	3	3	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0016	1653	3	2	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0017	1653	3	1	2	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0018	1653	3	3	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311