JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CROCC2_chr2_240901336_240998311	0/0	a0019	1653	3	2	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0020	1653	3	3	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0021	586	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0022	586	2	1	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0023	1653	2	2	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0024	1653	2	2	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0025	1653	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0026	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0027	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0028	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0029	1653	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0030	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0031	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0032	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0033	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0034	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0035	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0036	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0037	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0038	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0039	1653	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0040	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0041	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0042	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/1	a0043	1653	1	0	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0044	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0045	1653	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0046	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0047	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0048	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0049	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0050	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0051	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0052	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0053	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0054	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0055	1653	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0056	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0057	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0058	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0059	1653	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0060	1653	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0061	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0062	1653	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	a0063	1653	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC_chr1_16916931_16977964	1/1	a0001	2017	156	14	48	67	9	16	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0002	2017	12	4	1	4	0	3	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0003	2017	12	8	4	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0004	2017	6	4	0	0	1	1	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0005	2017	6	0	0	6	0	0	copy fasta	CROCC	chr1	16916931	16977964