Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTS9_chr3_64510654_64693000	0/0	a0011	1935	3	3	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0012	1935	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0013	1935	2	0	0	1	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0014	1935	2	0	0	0	0	2	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0015	1935	2	0	0	2	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0016	1935	2	0	2	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0017	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0018	321	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0019	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0020	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0021	1935	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0022	1935	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0023	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0024	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0025	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0026	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0027	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0028	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0029	1935	1	0	0	1	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0030	1935	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0031	1935	1	0	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	a0032	1935	1	1	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTSL1_chr9_18469153_18915950	1/0	a0001	1762	102	26	24	39	3	9	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0002	1762	52	14	11	19	0	8	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0003	1762	13	1	1	11	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/1	a0004	1762	10	0	5	0	2	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0005	1762	5	5	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0006	1762	5	0	2	0	1	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0007	1762	5	0	2	2	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0008	1762	4	3	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0009	1762	2	0	0	0	0	2	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0010	1762	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0011	1762	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0012	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0013	1762	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0014	1762	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0015	1762	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0016	1762	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0017	1762	1	0	0	1	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0018	1762	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0019	1762	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0020	1762	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0021	1762	1	0	1	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0022	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0023	1762	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0024	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0025	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0026	1762	1	0	0	0	0	1	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0027	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL1_chr9_18469153_18915950	0/0	a0028	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950