JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CROCC_chr1_16916931_16977964	0/0	a0006	2017	4	4	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0007	2017	3	3	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0008	2017	3	2	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0009	2017	2	0	0	0	0	2	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0010	2017	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0011	2017	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0012	2017	2	1	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0013	2017	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0014	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0015	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0016	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0017	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0018	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0019	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0020	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0021	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0022	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0023	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0024	2017	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0025	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0026	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0027	2017	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0028	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0029	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0030	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0031	2017	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0032	2017	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	a0033	2017	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROT_chr7_87340664_87404794	1/1	a0001	612	251	77	41	106	9	16	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0002	612	22	10	2	0	2	8	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0003	612	3	0	3	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0004	612	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0005	612	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0006	612	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0007	612	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0008	612	1	0	0	0	1	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	a0009	612	1	1	0	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CRPPA_chr7_16082525_16426538	1/0	a0001	451	204	59	26	96	6	16	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/1	a0002	451	77	19	15	30	2	10	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	a0003	451	3	0	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	a0004	451	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	a0005	451	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	a0006	451	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	a0007	451	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRP_chr1_159707289_159719589	1/1	a0001	224	434	98	80	202	14	38	copy fasta	CRP	chr1	159707289	159719589
CRTAC1_chr10_97860000_98035621	1/1	a0001	661	191	81	26	52	6	24	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	a0002	661	11	2	5	0	2	2	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	a0003	661	1	0	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	a0004	661	1	1	0	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAM_chr11_122833500_122877643	0/1	a0001	393	199	25	49	85	11	28	copy fasta	CRTAM	chr11	122833500	122877643