JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRTAM_chr11_122833500_122877643	1/0	a0002	393	128	43	17	49	5	13	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0003	393	64	0	4	54	0	6	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0004	393	9	9	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0005	393	9	8	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0006	393	6	6	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0007	393	5	0	0	4	0	1	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0008	393	3	3	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0009	393	3	2	1	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0010	393	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAM_chr11_122833500_122877643	0/0	a0011	393	1	1	0	0	0	0	copy fasta	CRTAM	chr11	122833500	122877643
CRTAP_chr3_33109014_33152773	1/1	a0001	401	401	87	78	177	12	45	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	a0002	401	3	0	0	0	0	3	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	a0003	401	2	0	0	0	2	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	a0004	401	1	1	0	0	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTAP_chr3_33109014_33152773	0/0	a0005	401	1	0	0	1	0	0	copy fasta	CRTAP	chr3	33109014	33152773
CRTC1_chr19_18678680_18787333	1/1	a0001	634	224	78	58	51	6	29	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0002	634	39	2	3	21	5	8	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0003	634	7	0	4	1	1	1	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0004	634	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0005	634	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0006	634	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	a0007	634	1	0	0	1	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC2_chr1_153942675_153963612	1/1	a0001	693	248	65	44	97	10	30	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0002	693	104	10	26	58	1	9	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0003	693	5	0	0	5	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0004	693	4	0	0	4	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0005	693	2	0	0	2	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0006	693	2	0	0	0	0	2	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0007	693	1	0	0	0	0	1	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0008	693	1	1	0	0	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0009	693	1	0	0	1	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0010	693	1	0	0	0	1	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	a0011	693	1	0	0	1	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC3_chr15_90524923_90650345	1/0	a0001	619	170	45	35	69	7	13	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/1	a0002	619	71	18	17	17	7	11	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0003	465	26	6	7	11	0	2	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0004	465	5	3	1	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0005	619	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0006	619	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0007	619	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	a0008	619	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRX_chr19_47816937_47848324	1/1	a0001	299	330	86	72	109	18	43	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0002	299	7	6	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0003	299	2	0	2	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0004	299	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0005	299	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0006	299	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	a0007	299	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRY1_chr12_106986364_107098549	1/1	a0001	586	319	76	61	134	8	38	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	a0002	586	1	0	1	0	0	0	copy fasta	CRY1	chr12	106986364	107098549