JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRY2_chr11_45842475_45888244	1/1	a0001	593	368	94	66	148	16	42	copy fasta	CRY2	chr11	45842475	45888244
CRYAA_chr21_43164008_43177805	0/0	a0000	0	4	1	2	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	a0001	173	33	11	4	5	6	7	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	a0002	173	1	0	0	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	a0003	186	1	0	0	0	0	1	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	a0004	146	1	0	0	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAB_chr11_111903564_111916770	1/1	a0001	175	392	93	82	166	7	42	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0002	175	1	0	0	0	1	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0003	175	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0004	175	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0005	175	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0006	175	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	a0007	175	1	1	0	0	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYBA1_chr17_29241859_29259494	1/1	a0001	215	391	87	74	168	14	46	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	a0002	215	1	0	1	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	a0003	215	1	0	1	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	a0004	215	1	1	0	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA2_chr2_218985190_218998422	1/1	a0001	197	386	94	73	168	5	44	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	a0002	197	2	0	1	0	1	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	a0003	197	1	0	0	1	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	a0004	197	1	0	0	1	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA4_chr22_26616963_26635669	1/1	a0001	196	399	91	78	184	14	30	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	0/0	a0002	196	3	3	0	0	0	0	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBB1_chr22_26594278_26623027	1/1	a0001	252	424	88	77	201	14	42	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	a0002	236	1	0	1	0	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	a0003	168	1	0	0	1	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB2_chr22_25214639_25236869	1/1	a0001	205	445	90	83	206	16	48	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	a0002	205	14	0	0	14	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	a0003	205	3	2	1	0	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	a0004	205	2	2	0	0	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB3_chr22_25194858_25212359	0/1	a0001	211	332	40	61	187	10	33	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	1/0	a0002	211	111	48	22	17	7	16	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	a0003	211	6	4	1	0	0	1	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	a0004	211	2	2	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	a0005	211	1	1	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	a0006	211	1	1	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	a0007	211	1	0	0	0	1	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBG1_chr6_106355717_106577017	0/1	a0001	2131	73	6	13	41	3	9	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0002	2131	25	6	7	7	1	4	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0003	2131	23	1	0	21	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0004	2131	22	1	6	7	2	6	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	1/0	a0005	2131	16	5	3	6	1	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0006	2131	11	3	4	4	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0007	2131	9	9	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0008	2131	5	0	4	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0009	2131	4	4	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0010	2131	4	1	3	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0011	2131	4	0	0	4	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0012	2131	4	4	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0013	2131	3	3	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017