JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRYBG1_chr6_106355717_106577017	0/0	a0064	2131	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0065	2131	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0066	2131	1	0	0	0	1	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0067	2131	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	a0068	2131	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG2_chr1_26316865_26359130	1/0	a0001	1661	91	12	16	52	0	10	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0002	1644	81	7	20	47	2	5	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0003	1644	56	27	13	4	6	6	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/1	a0004	1661	49	10	9	21	0	8	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0005	1661	19	0	0	19	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0006	1644	10	7	1	1	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0007	1644	10	7	3	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0008	1661	9	0	0	9	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0009	1661	6	0	1	0	4	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0010	1661	5	4	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0011	1644	4	3	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0012	1661	3	1	2	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0013	1662	3	3	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0014	1661	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0015	1661	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0016	1644	2	2	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0017	1644	2	1	0	0	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0018	1644	2	0	0	0	1	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0019	1644	2	0	1	0	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0020	1661	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0021	1661	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0022	1661	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0023	1661	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0024	1661	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0025	1644	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0026	1661	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0027	1661	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0028	1661	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0029	1661	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0030	1644	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0031	1644	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0032	1644	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0033	1644	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0034	1644	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0035	1644	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	a0036	1661	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG3_chr3_97817011_97949984	0/0	a0001	2970	95	17	20	45	5	8	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	1/0	a0002	2970	88	33	15	27	3	9	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0003	2970	59	5	18	22	5	9	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0004	2970	7	6	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0005	2970	7	0	1	5	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0006	2970	5	5	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0007	2970	4	4	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0008	2970	4	3	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0009	2970	3	0	0	3	0	0	copy fasta	CRYBG3	chr3	97817011	97949984