JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRYBG3_chr3_97817011_97949984	0/0	a0010	2970	3	3	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0011	2970	3	0	2	0	1	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0012	2970	3	2	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0013	2970	2	0	0	2	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0014	2970	2	0	0	0	2	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0015	2970	2	0	0	0	0	2	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0016	2970	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0017	2970	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0018	2970	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0019	2970	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0020	2970	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0021	2970	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0022	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/1	a0023	2970	1	0	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0024	2970	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0025	2970	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0026	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0027	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0028	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0029	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0030	2970	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0031	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0032	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0033	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0034	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0035	2970	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0036	2970	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0037	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0038	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0039	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0040	2970	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0041	2970	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	a0042	2970	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYGA_chr2_208155740_208168589	1/1	a0001	174	387	94	70	159	18	44	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	a0002	98	3	0	3	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	a0003	174	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	a0004	174	1	0	1	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	a0005	174	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	a0006	174	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGB_chr2_208137573_208151158	0/1	a0001	175	255	61	37	112	9	35	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	1/0	a0002	175	157	36	33	71	7	9	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	a0003	175	1	0	0	1	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	a0004	175	1	1	0	0	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGC_chr2_208123137_208134828	1/1	a0001	174	439	100	69	208	15	45	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	a0002	174	3	0	1	0	1	1	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	a0003	174	1	0	1	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	a0004	174	1	0	1	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGD_chr2_208116607_208129524	1/1	a0001	174	450	99	75	213	15	46	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	a0002	174	3	1	0	1	1	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	a0003	55	1	0	1	0	0	0	copy fasta	CRYGD	chr2	208116607	208129524