JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CRYGN_chr7_151423832_151445141	1/1	a0001	182	445	96	74	207	18	48	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	a0002	182	4	4	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	a0003	182	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	a0004	182	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	a0005	182	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGS_chr3_186533443_186549380	1/1	a0001	178	391	90	76	165	18	40	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	a0002	178	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	a0003	178	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	a0004	178	1	1	0	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	a0005	178	1	1	0	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	a0006	178	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYL1_chr13_20398669_20530857	1/1	a0001	319	249	90	43	84	8	22	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	a0002	319	1	0	1	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYM_chr16_21253521_21283290	1/1	a0001	314	392	83	62	187	14	44	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	a0002	314	1	1	0	0	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	a0003	314	1	0	0	1	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYZL1_chr21_33584341_33646741	1/1	a0001	349	359	84	72	148	15	38	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZL1_chr21_33584341_33646741	0/0	a0002	349	1	0	0	0	1	0	copy fasta	CRYZL1	chr21	33584341	33646741
CRYZ_chr1_74700486_74738050	0/1	a0001	329	198	46	21	109	2	19	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	1/0	a0002	329	171	44	48	43	12	23	copy fasta	CRYZ	chr1	74700486	74738050
CRYZ_chr1_74700486_74738050	0/0	a0003	329	3	2	1	0	0	0	copy fasta	CRYZ	chr1	74700486	74738050
CSAD_chr12_53152663_53185925	1/1	a0001	493	328	89	41	148	6	42	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	a0002	493	2	0	2	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	a0003	493	1	1	0	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	a0004	493	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	a0005	493	1	0	1	0	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAD_chr12_53152663_53185925	0/0	a0006	493	1	0	0	1	0	0	copy fasta	CSAD	chr12	53152663	53185925
CSAG1_chrX_152722484_152738721	1/1	a0001	78	147	52	39	41	6	7	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	a0002	78	146	20	14	88	2	22	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	a0003	78	22	5	7	9	1	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	a0004	78	2	2	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG1_chrX_152722484_152738721	0/0	a0005	78	1	1	0	0	0	0	copy fasta	CSAG1	chrX	152722484	152738721
CSAG2_chrX_152703261_152714273	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0001	127	134	45	15	59	5	10	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0002	127	71	8	25	27	6	5	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0003	28	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0004	127	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0005	127	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0006	127	1	1	0	0	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSAG2_chrX_152703261_152714273	0/0	a0007	36	1	0	0	1	0	0	copy fasta	CSAG2	chrX	152703261	152714273
CSDC2_chr22_41556010_41581666	1/1	a0001	153	288	92	64	80	12	38	copy fasta	CSDC2	chr22	41556010	41581666
CSDE1_chr1_114711916_114762984	1/1	a0001	798	328	90	64	120	12	40	copy fasta	CSDE1	chr1	114711916	114762984
CSE1L_chr20_49041312_49101949	1/1	a0001	971	368	85	68	170	8	35	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	a0002	971	14	0	2	6	0	6	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	a0003	971	1	0	0	1	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	a0004	971	1	1	0	0	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	a0005	971	1	0	0	0	0	1	copy fasta	CSE1L	chr20	49041312	49101949
CSE1L_chr20_49041312_49101949	0/0	a0006	211	1	0	0	1	0	0	copy fasta	CSE1L	chr20	49041312	49101949
CSF1R_chr5_150048295_150091554	1/1	a0001	972	300	68	52	127	15	36	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0002	972	73	10	11	45	1	6	copy fasta	CSF1R	chr5	150048295	150091554