Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	102723547
ensemblid	ENSG00000268902.4
hgncid	16847
symbol	CSAG2
name	CSAG family member 2
refseq_nuc	NM_001395334.1
refseq_prot	NP_001382263.1
ensembl_nuc	ENST00000638741.2
ensembl_prot	ENSP00000491733.1
mane_status	MANE Select
chr	chrX
start	152708261
end	152709273
strand	-
ver	v1.2
region	chrX:152708261-152709273
region5000	chrX:152703261-152714273
regionname0	CSAG2_chrX_152708261_152709273
regionname5000	CSAG2_chrX_152703261_152714273

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	127	210	56	40	88	11	15	68	CSAG2_chrX_152703261_152714273	CSAG2	MWMGL others(122): Show MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAW RDQVDWSRLLRDTGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGP EALSKFPRQPGREKGPIKEVPGTKGSP	chrX	152703261	152714273
a0002	0/0	0	1	0	0	1	0	0	1	CSAG2_chrX_152703261_152714273	CSAG2		chrX	152703261	152714273

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		381	210	56	40	88	11	15	CSAG2_chrX_152703261_152714273	CSAG2		ATGTG others(376): Show ATGTGGATGGGCCTCATCCAATTAGTTGAAGGTGTTAAGAGAAAAGACCA AGGTTTCCTGGAAAAGGAATTCTACCACAAGACTAACATAAAAATGCGCT GTGAGTTTCTAGCCTGCTGGCCTGCCTTCACTGTCCTGGGGGAGGCTTGG AGAGACCAGGTGGACTGGAGTAGACTGTTGAGAGACACTGGTCTGGTGAA GATGTCCAGGAAACCACGAGCCTCCAGCCCATTGTCCAACAACCACCCAC CAACACCAAAGAGGCGAGGAAGTGGAAGGCATCCTCTCAACCCTGGCCCA GAAGCCCTATCAAAGTTCCCAAGACAACCCGGAAGGGAAAAGGGACCCAT CAAGGAAGTTCCAGGAACAAAAGGCTCTCCC	chrX	152703261	152714273
a0002c0000	0/0		0	1	0	0	1	0	0	CSAG2_chrX_152703261_152714273	CSAG2			chrX	152703261	152714273

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	855	210	56	40	88	11	15	CSAG2_chrX_152703261_152714273	CSAG2	CAAGA others(850): Show CAAGATATGTGCAATGGCTAGTACTATGTGTCAACTTGTCTAGGCTATAC TGCTCAGCTGTGTGGTCAAACAGTAGTCTAGATGTTGCTGTGAAGGTATT TTGTAGATGTGATCAACATTTACAATCAGTTGATTTTAAGTAAAGCAGTT TAACTTCCATAATGTGGATGGGCCTCATCCAATTAGTTGAAGGTGTTAAG AGAAAAGACCAAGGTTTCCTGGAAAAGGAATTCTACCACAAGACTAACAT AAAAATGCGCTGTGAGTTTCTAGCCTGCTGGCCTGCCTTCACTGTCCTGG GGGAGGCTTGGAGAGACCAGGTGGACTGGAGTAGACTGTTGAGAGACACT GGTCTGGTGAAGATGTCCAGGAAACCACGAGCCTCCAGCCCATTGTCCAA CAACCACCCACCAACACCAAAGAGGCGAGGAAGTGGAAGGCATCCTCTCA ACCCTGGCCCAGAAGCCCTATCAAAGTTCCCAAGACAACCCGGAAGGGAA AAGGGACCCATCAAGGAAGTTCCAGGAACAAAAGGCTCTCCCTAAAAGAC CGCCGCTTCAAAAAAACCTGAGGAATGGAGTGGGCCAACACTATCCAGCC ACTCTGACCAGCCGAACGAGGAACTCAATCAAAATGAGCCATAGCGGGAC CACAAGGGCAAGGAGACCACCACCTTCTCCAGTCTCTCTTCGGACAGCCA GTAATTCCCGGGCAAGGCCAGAGACTTCAAGTCTATCTGAAAAGTCTCCA GAGGTCTAACCCCAGATAAATAGCCAACAGGGTGTAGAGTACATTTTACA CCCCAAAGAGTGTGCCCCATGGTGATGAAAATAAAGTGAACATGTTGCAA AATGA	chrX	152703261	152714273
a0002c0000t0000	0/0	0	1	0	0	1	0	0	CSAG2_chrX_152703261_152714273	CSAG2		chrX	152703261	152714273

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	210	56	40	88	11	15	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
a0002c0000t0000g0000	0/0	1	0	0	1	0	0	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00280	hp1	a0001	c0001	t0001	g0001	EUR	FIN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00323	hp1	a0001	c0001	t0001	g0001	EUR	FIN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00408	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00438	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00438	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00558	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00558	hp2	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00609	hp1	a0001	c0001	t0001	g0001	EAS	CHS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00735	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00741	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG00741	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01071	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01168	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01168	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01175	hp1	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01175	hp2	a0001	c0001	t0001	g0001	AMR	PUR	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01256	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01346	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01433	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01516	hp2	a0001	c0001	t0001	g0001	EUR	IBS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01517	hp2	a0001	c0001	t0001	g0001	EUR	IBS	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01891	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01981	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01981	hp2	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02004	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02004	hp2	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02040	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02056	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02080	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02129	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02148	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02148	hp2	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02155	hp1	a0001	c0001	t0001	g0001	EAS	CDX	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02257	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02293	hp1	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02293	hp2	a0001	c0001	t0001	g0001	AMR	PEL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02451	hp1	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02622	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02622	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02818	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02897	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02897	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02970	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02970	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03041	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03195	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03239	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03453	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03453	hp2	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03516	hp2	a0001	c0001	t0001	g0001	AFR	ESN	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03540	hp1	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03704	hp1	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03704	hp2	a0001	c0001	t0001	g0001	SAS	PJL	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03831	hp1	a0001	c0001	t0001	g0001	SAS	BEB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18939	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18941	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18942	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18942	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18947	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18947	hp2	a0002	c0000	t0000	g0000	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18950	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18954	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18954	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18963	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18967	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18979	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18979	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18984	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18988	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18991	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18991	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18995	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18997	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18997	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18998	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18998	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18999	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18999	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19010	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19054	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19054	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19064	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19064	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19065	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19081	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19081	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19240	hp1	a0001	c0001	t0001	g0001	AFR	YRI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA19240	hp2	a0001	c0001	t0001	g0001	AFR	YRI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20129	hp1	a0001	c0001	t0001	g0001	AFR	ASW	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20129	hp2	a0001	c0001	t0001	g0001	AFR	ASW	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01123	hp1	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20300	hp1	a0001	c0001	t0001	g0001	AFR	USA	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA21309	hp1	a0001	c0001	t0001	g0001	AFR	LWK	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273
NA21309	hp2	a0001	c0001	t0001	g0001	AFR	LWK	CSAG2_chrX_152703261_152714273	CSAG2	chrX	152703261	152714273

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:152708895	C C	T T	1	a0001 a0001	1	NA20129.hp2 NA20129.hp2	missense_variant	MODERATE	c.218G>A c.218G>A	p.Arg73Gln p.Arg73Gln	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	379/855	218/384	73/127	chrX	152708895
chrX:152708926	T T	C C	1	a0001 a0001	138	HG00140.hp1 HG00280.hp1 HG00323.hp1 others(135): Show HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00558.hp2 HG00609.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01123.hp2 HG01168.hp1 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG01891.hp1 HG01981.hp1 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02135.hp1 HG02145.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02738.hp1 HG02818.hp1 HG02897.hp2 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18950.hp2 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18967.hp2 NA18968.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA18986.hp1 NA18991.hp2 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19006.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19067.hp1 NA19068.hp1 NA19076.hp1 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19086.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp2	missense_variant	MODERATE	c.187A>G c.187A>G	p.Thr63Ala p.Thr63Ala	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	348/855	187/384	63/127	chrX	152708926
chrX:152708997	C C	T T	1	a0001 a0001	1	HG02922.hp2 HG02922.hp2	missense_variant	MODERATE	c.116G>A c.116G>A	p.Cys39Tyr p.Cys39Tyr	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	277/855	116/384	39/127	chrX	152708997
chrX:152709015	C C	T T	1	a0001 a0001	1	HG03516.hp2 HG03516.hp2	missense_variant	MODERATE	c.98G>A c.98G>A	p.Arg33His p.Arg33His	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	259/855	98/384	33/127	chrX	152709015

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:152708942	A A	G G	1	a0001c0001 a0001c0001	16	HG00438.hp1 HG00558.hp1 HG01123.hp1 others(13): Show HG00438.hp1 HG00558.hp1 HG01123.hp1 HG01361.hp2 HG02040.hp1 HG02056.hp1 HG02129.hp1 NA18939.hp1 NA18941.hp1 NA18942.hp1 NA18970.hp1 NA18988.hp1 NA18991.hp1 NA19009.hp1 NA19085.hp1 NA19089.hp1	synonymous_variant	LOW	c.171T>C c.171T>C	p.Ser57Ser p.Ser57Ser	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	332/855	171/384	57/127			chrX	152708942

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chrX:152708280	C C	T T	1	a0001c0001t0001 a0001c0001t0001	1	HG03516.hp1 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.291G>A c.291G>A	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	291	chrX	152708280
chrX:152708288	T T	C C	1	a0001c0001t0001 a0001c0001t0001	1	HG03516.hp1 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.283A>G c.283A>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	283	chrX	152708288
chrX:152708304	C C	T T	1	a0001c0001t0001 a0001c0001t0001	1	HG03516.hp1 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.267G>A c.267G>A	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	267	chrX	152708304
chrX:152708307	T T	C C	1	a0001c0001t0001 a0001c0001t0001	1	HG03516.hp1 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.264A>G c.264A>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	264	chrX	152708307
chrX:152708323	T T	C C	1	a0001c0001t0001 a0001c0001t0001	5	NA18948.hp1 NA18963.hp1 NA18965.hp1 others(2): Show NA18948.hp1 NA18963.hp1 NA18965.hp1 NA19010.hp1 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.248A>G c.248A>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	248	chrX	152708323
chrX:152708561	C C	T T	1	a0001c0001t0001 a0001c0001t0001	6	HG03490.hp1 NA18948.hp1 NA18965.hp1 others(3): Show HG03490.hp1 NA18948.hp1 NA18965.hp1 NA18999.hp2 NA19010.hp1 NA19067.hp1	3_prime_UTR_variant	MODIFIER	c.10G>A c.10G>A	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	2/2	10	chrX	152708561
chrX:152709115	T T	A A	1	a0001c0001t0001 a0001c0001t0001	15	HG00280.hp1 HG00741.hp1 HG01168.hp1 others(12): Show HG00280.hp1 HG00741.hp1 HG01168.hp1 HG01256.hp1 HG01346.hp1 HG01358.hp1 HG02004.hp1 HG02071.hp1 HG02630.hp1 HG02976.hp2 NA18942.hp2 NA18944.hp1 NA18950.hp2 NA18986.hp1 NA19054.hp1	5_prime_UTR_variant	MODIFIER	c.-3A>T c.-3A>T	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	3	chrX	152709115
chrX:152709245	A A	C C	1	a0001c0001t0001 a0001c0001t0001	3	HG01891.hp1 HG03041.hp2 NA20129.hp1 HG01891.hp1 HG03041.hp2 NA20129.hp1	5_prime_UTR_variant	MODIFIER	c.-133T>G c.-133T>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	133	chrX	152709245
chrX:152709245	A A	G G	1	a0001c0001t0001 a0001c0001t0001	1	NA18963.hp1 NA18963.hp1	5_prime_UTR_variant	MODIFIER	c.-133T>C c.-133T>C	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	133	chrX	152709245
chrX:152709250	G G	A A	1	a0001c0001t0001 a0001c0001t0001	6	HG02280.hp2 HG02572.hp1 HG02630.hp2 others(3): Show HG02280.hp2 HG02572.hp1 HG02630.hp2 HG02976.hp2 NA19030.hp2 NA20300.hp1	5_prime_UTR_variant	MODIFIER	c.-138C>T c.-138C>T	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/2	138	chrX	152709250

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:152708643	A A	G G	1	a0001c0001t0001g0001 a0001c0001t0001g0001	156	HG00140.hp1 HG00280.hp1 HG00323.hp1 others(153): Show HG00140.hp1 HG00280.hp1 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00438.hp2 HG00558.hp2 HG00609.hp1 HG00735.hp2 HG00741.hp1 HG00741.hp2 HG01071.hp1 HG01109.hp1 HG01123.hp2 HG01168.hp1 HG01175.hp2 HG01255.hp1 HG01256.hp1 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG01891.hp1 HG01891.hp2 HG01952.hp1 HG01981.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03831.hp1 HG03831.hp2 HG04115.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA18939.hp2 NA18940.hp1 NA18941.hp2 NA18942.hp2 NA18944.hp1 NA18945.hp1 NA18947.hp1 NA18948.hp1 NA18950.hp2 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18967.hp2 NA18968.hp2 NA18977.hp1 NA18979.hp1 NA18979.hp2 NA18984.hp1 NA18986.hp1 NA18991.hp2 NA18994.hp1 NA18995.hp1 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19006.hp1 NA19007.hp1 NA19010.hp1 NA19010.hp2 NA19030.hp1 NA19030.hp2 NA19054.hp1 NA19054.hp2 NA19062.hp1 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19076.hp1 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19086.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	splice_region_variant&intron_variant	LOW	c.315-3T>C c.315-3T>C	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/1	chrX	152708643
chrX:152708710	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	4	HG01891.hp1 HG03041.hp2 HG03486.hp2 others(1): Show HG01891.hp1 HG03041.hp2 HG03486.hp2 NA20129.hp1	intron_variant	MODIFIER	c.315-70C>G c.315-70C>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/1	chrX	152708710
chrX:152708716	T T	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	18	HG00609.hp1 HG02080.hp1 HG02155.hp1 others(15): Show HG00609.hp1 HG02080.hp1 HG02155.hp1 NA18941.hp2 NA18963.hp2 NA18967.hp2 NA18968.hp2 NA18979.hp1 NA18979.hp2 NA18991.hp2 NA18997.hp2 NA19006.hp1 NA19007.hp1 NA19010.hp2 NA19062.hp1 NA19065.hp2 NA19068.hp1 NA19086.hp1	intron_variant	MODIFIER	c.315-76A>G c.315-76A>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/1	chrX	152708716
chrX:152708778	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	2	HG01891.hp1 NA20129.hp1 HG01891.hp1 NA20129.hp1	intron_variant	MODIFIER	c.314+21C>G c.314+21C>G	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/1	chrX	152708778
chrX:152708793	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	4	HG02976.hp1 HG03195.hp2 NA18906.hp2 others(1): Show HG02976.hp1 HG03195.hp2 NA18906.hp2 NA20300.hp2	splice_region_variant&intron_variant	LOW	c.314+6C>T c.314+6C>T	CSAG2	ENSG00000268902.4	transcript	ENST00000638741.2	protein_coding	1/1	chrX	152708793

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JoGo Haplotype Explorer

CSAG2_chrX_152703261_152714273 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 2)

Coding Level Haplotype Info (Total: 2)

Transcript Level Haplotype Info (Total: 2)

Genebody Level Haplotype Info (Total: 2)

Haplotype Details by Sample (Haploid Level) (Total: 211)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 4)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 10)

Genebody Level Haplotype Variants (Intron) (Total: 5)

Annotation (Repeats)

Annotation (SNP Array)