JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSF1R_chr5_150048295_150091554	0/0	a0003	972	13	10	3	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0004	972	8	0	0	8	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0005	972	3	0	3	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0006	972	3	2	1	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0007	972	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0008	972	2	2	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0009	972	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1R_chr5_150048295_150091554	0/0	a0010	972	1	1	0	0	0	0	copy fasta	CSF1R	chr5	150048295	150091554
CSF1_chr1_109905849_109935992	0/1	a0001	554	195	44	41	77	3	29	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0002	554	147	24	23	83	7	10	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0003	554	53	12	5	31	0	5	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0004	461	19	9	0	9	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0005	437	8	1	1	6	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	1/0	a0006	554	3	1	1	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0007	554	2	2	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0008	437	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0009	461	1	0	1	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0010	554	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0011	554	1	0	0	0	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0012	554	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0013	461	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	a0014	554	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF2RA_chrX_1263814_1314935	1/1	a0001	400	117	18	34	43	1	19	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0002	400	28	23	2	2	0	1	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0003	400	3	3	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0004	275	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0005	400	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0006	11	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0007	400	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0008	275	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0009	63	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0010	34	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0011	19	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	a0012	19	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RB_chr22_36908628_36945439	1/1	a0001	897	310	64	75	115	15	39	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0002	897	21	16	2	1	0	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0003	897	7	7	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0004	897	6	3	0	0	1	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0005	897	4	4	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0006	897	2	2	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0007	897	2	1	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0008	897	2	0	0	0	0	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0009	897	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0010	228	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0011	897	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0012	897	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0013	897	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	a0014	897	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2_chr5_132068789_132081170	1/1	a0001	144	250	60	50	96	12	30	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	a0002	144	202	38	30	114	4	16	copy fasta	CSF2	chr5	132068789	132081170