JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSHL1_chr17_63904608_63916258	0/0	a0004	222	4	0	0	4	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0005	222	2	2	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0006	222	2	0	0	1	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0007	222	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0008	222	1	0	0	0	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0009	222	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSKMT_chr11_62660312_62673108	1/1	a0001	240	315	84	60	127	13	29	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	a0002	240	43	4	18	11	1	9	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	a0003	60	1	0	0	0	0	1	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	a0004	240	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	a0005	240	1	0	0	0	0	1	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	a0006	240	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSK_chr15_74777080_74808197	1/1	a0001	450	387	81	56	192	14	42	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	a0002	450	4	3	1	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	a0003	450	3	2	1	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSMD1_chr8_2930361_4999914	0/0	a0001	3564	52	20	6	17	1	8	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0002	3564	26	15	2	7	0	2	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0003	3564	4	4	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0004	3564	4	0	2	1	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0005	3564	3	1	2	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0006	3564	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0007	3564	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0008	3564	2	1	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0009	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0010	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0011	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0012	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0013	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0014	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0015	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0016	3564	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0017	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0018	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0019	3564	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0020	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0021	3564	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0022	3564	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0023	3564	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0024	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0025	3564	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0026	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0027	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0028	3564	1	0	0	0	1	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0029	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0030	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0031	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0032	3564	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0033	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0034	3564	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0035	3564	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914