Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTSL1_chr9_18469153_18915950	0/0	a0029	1762	1	1	0	0	0	0	copy fasta	ADAMTSL1	chr9	18469153	18915950
ADAMTSL2_chr9_133529704_133580519	1/1	a0001	951	105	38	20	20	10	15	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0002	951	40	8	4	21	3	4	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0003	951	2	2	0	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0004	951	2	0	1	0	0	1	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0005	951	1	0	1	0	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0006	951	1	0	0	1	0	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL2_chr9_133529704_133580519	0/0	a0007	951	1	0	0	0	1	0	copy fasta	ADAMTSL2	chr9	133529704	133580519
ADAMTSL3_chr15_83649123_84044842	0/1	a0001	1691	58	9	3	40	2	3	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0002	1691	57	25	11	15	0	6	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0003	1691	31	1	1	25	3	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0004	1691	26	1	5	15	3	2	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0005	1691	14	0	6	2	3	3	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	1/0	a0006	1691	13	0	2	2	2	6	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0007	1691	12	12	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0008	1691	9	5	4	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0009	1691	5	1	2	0	2	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0010	1691	4	4	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0011	1691	3	0	0	3	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0012	1691	3	3	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0013	1691	3	0	2	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0014	1691	2	0	0	2	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0015	1691	2	0	1	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0016	1691	2	0	0	2	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0017	1691	2	1	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0018	1687	2	2	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0019	1691	2	2	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0020	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0021	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0022	1691	1	0	0	0	1	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0023	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0024	1691	1	0	0	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0025	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0026	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0027	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0028	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0029	1691	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0030	1691	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0031	1691	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0032	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0033	1691	1	0	1	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0034	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0035	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0036	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0037	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0038	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0039	1691	1	1	0	0	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0040	1691	1	0	0	0	0	1	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0041	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL3_chr15_83649123_84044842	0/0	a0042	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842