JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSMD1_chr8_2930361_4999914	0/0	a0036	3564	1	0	0	0	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0037	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0038	3564	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	a0039	3564	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD2_chr1_33508998_34170230	0/0	a0001	3631	12	2	5	2	2	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	1/1	a0002	3631	9	4	3	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0003	3631	8	4	3	0	0	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0004	3631	5	3	1	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0005	3631	3	3	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0006	3631	2	2	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0007	3631	2	2	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0008	3631	2	2	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0009	3631	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0010	3631	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0011	3631	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0012	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0013	3631	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0014	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0015	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0016	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0017	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0018	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0019	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0020	3631	1	0	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0021	3631	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0022	3631	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0023	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0024	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0025	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0026	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0027	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0028	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0029	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0030	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	a0031	3631	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD3_chr8_112217928_113441939	0/0	a0001	3707	30	17	6	5	0	2	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0002	3707	17	8	5	2	0	2	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	1/1	a0003	3707	12	2	2	2	0	4	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0004	3707	5	1	2	2	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0005	3707	2	2	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0006	3707	2	2	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0007	3707	2	2	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0008	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0009	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0010	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0011	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0012	3707	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0013	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0014	3707	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0015	3707	1	0	0	1	0	0	copy fasta	CSMD3	chr8	112217928	113441939