JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSMD3_chr8_112217928_113441939	0/0	a0016	3707	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	a0017	3707	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSN1S1_chr4_69926068_69951574	1/1	a0001	186	281	65	38	141	11	24	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	a0002	186	162	26	36	73	7	20	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	a0003	186	2	1	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	a0004	186	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	a0005	186	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	a0006	168	1	0	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN2_chr4_69950256_69970728	1/1	a0001	226	440	90	73	219	16	40	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	a0002	226	3	0	3	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	a0003	226	3	3	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	a0004	226	1	1	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	a0005	226	1	0	0	1	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN3_chr4_70237597_70256432	1/0	a0001	182	261	79	51	91	11	28	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/1	a0002	182	101	2	8	77	4	9	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0003	182	92	8	15	61	1	7	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0004	182	4	4	0	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0005	182	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0006	182	1	0	1	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0007	182	1	1	0	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0008	182	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0009	182	1	0	1	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	a0010	182	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSNK1A1L_chr13_37098259_37110664	0/0	a0001	337	219	41	33	112	10	23	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	1/1	a0002	337	135	37	31	41	4	20	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0003	337	30	3	7	16	3	1	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0004	336	5	5	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0005	337	4	0	0	4	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0006	337	3	0	0	3	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0007	337	3	2	1	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0008	337	2	2	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0009	337	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0010	337	1	0	0	0	1	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	a0011	337	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1_chr5_149487982_149556439	1/1	a0001	337	390	96	66	182	12	32	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1D_chr17_82237667_82278700	1/1	a0001	415	320	94	66	100	16	42	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1E_chr22_38285691_38322433	1/1	a0001	416	398	100	70	166	14	46	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	a0002	416	14	0	0	14	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1G1_chr15_64160525_64361173	1/1	a0001	422	175	82	21	40	6	24	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	a0002	422	1	0	1	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G2_chr19_1936172_1986338	1/1	a0001	415	361	90	61	144	16	48	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	a0002	415	18	4	7	7	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	a0003	415	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	a0004	415	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	a0005	415	1	0	0	1	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G3_chr5_123507177_123622049	1/1	a0001	456	294	92	62	108	12	18	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK2A1_chr20_467498_548790	1/1	a0001	391	315	94	60	111	14	34	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	a0002	391	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A2_chr16_58152907_58203106	1/1	a0001	350	399	90	61	186	16	44	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	a0002	222	1	0	1	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106