JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSNK2A3_chr11_11346942_11358250	0/1	a0001	391	183	15	36	95	10	26	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0002	391	109	15	21	64	1	8	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0003	391	100	26	17	47	3	7	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	1/0	a0004	391	25	23	0	0	1	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0005	391	10	9	1	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0006	391	8	1	2	1	1	3	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0007	391	2	1	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0008	391	2	0	0	0	0	2	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0009	391	2	0	0	2	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0010	391	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0011	155	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0012	391	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0013	391	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0014	391	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0015	391	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0016	391	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0017	279	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0018	391	1	0	1	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0019	391	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	a0020	391	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2B_chr6_31661080_31675067	0/1	a0001	215	421	90	78	186	18	48	copy fasta	CSNK2B	chr6	31661080	31675067
CSNKA2IP_chr3_88333456_88472594	0/1	a0001	719	221	12	41	136	8	23	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	1/0	a0002	734	71	42	14	9	1	4	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0003	734	46	10	2	29	0	5	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0004	734	14	7	4	0	1	2	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0005	711	7	0	6	0	1	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0006	734	5	4	1	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0007	719	3	0	0	3	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0008	719	3	3	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0009	734	2	2	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0010	719	2	0	0	2	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0011	719	2	0	0	0	0	2	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0012	734	1	0	0	0	1	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0013	734	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0014	734	1	0	0	0	0	1	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0015	733	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0016	734	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0017	719	1	0	0	0	0	1	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0018	719	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0019	719	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0020	719	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	a0021	719	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSPG4_chr15_75669322_75717848	1/0	a0001	2322	226	49	37	106	6	27	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/1	a0002	2322	64	5	26	19	4	9	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0003	2322	20	0	0	20	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0004	2322	17	2	12	0	3	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0005	2322	7	6	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0006	2322	6	6	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0007	2322	4	4	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0008	2322	3	1	0	0	2	0	copy fasta	CSPG4	chr15	75669322	75717848