JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSPG4_chr15_75669322_75717848	0/0	a0009	2322	3	3	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0010	2322	2	0	0	2	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0011	2322	2	0	0	2	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0012	2322	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0013	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0014	2322	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0015	2322	1	0	0	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0016	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0017	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0018	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0019	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0020	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0021	2322	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0022	2322	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0023	2322	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0024	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0025	2322	1	0	0	0	1	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0026	2322	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0027	2322	1	0	0	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0028	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0029	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0030	2322	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	a0031	2322	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG5_chr3_47557238_47583865	1/1	a0001	539	185	54	36	71	2	20	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	a0002	539	170	23	38	74	13	22	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	a0003	539	4	4	0	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	a0004	539	2	1	0	0	1	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	a0005	539	1	0	0	1	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPP1_chr8_67059392_67201614	1/0	a0001	1226	94	27	23	21	4	18	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0002	1226	39	27	7	1	0	4	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0003	1226	16	0	0	10	0	6	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0004	1226	3	3	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0005	1226	2	2	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0006	1226	2	2	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	a0007	1226	1	1	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/1	a0008	1226	1	0	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSRNP1_chr3_39136855_39158591	0/1	a0001	589	312	74	56	133	13	35	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	1/0	a0002	589	109	24	23	48	5	8	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0003	589	3	0	2	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0004	589	1	0	0	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0005	589	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0006	589	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0007	589	1	0	0	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0008	589	1	0	0	1	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	a0009	589	1	0	1	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP2_chr12_51056205_51088596	1/0	a0001	543	397	78	78	186	13	41	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/1	a0002	543	13	10	0	0	1	1	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	a0003	543	4	4	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	a0004	543	3	0	0	3	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	a0005	543	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596