JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSRNP2_chr12_51056205_51088596	0/0	a0006	543	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	a0007	543	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP3_chr2_165464698_165694407	1/1	a0001	585	231	76	45	83	4	21	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0002	585	9	7	1	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0003	585	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0004	585	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0005	585	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0006	585	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0007	585	1	0	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	a0008	585	1	0	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRP1_chr1_201478530_201512123	1/1	a0001	193	417	93	78	190	16	38	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	a0002	193	12	0	0	10	0	2	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	a0003	193	3	3	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP2_chr12_76853709_76884019	1/1	a0001	193	386	94	82	154	16	38	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	a0002	193	1	1	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	a0003	193	1	1	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP3_chr11_19177030_19206983	1/1	a0001	194	413	95	72	187	16	41	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	a0002	194	1	0	0	1	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	a0003	194	1	0	0	0	0	1	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	a0004	194	1	1	0	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CST11_chr20_23445412_23457876	1/1	a0001	138	437	95	72	219	12	37	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	a0002	68	4	0	0	4	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	a0003	138	2	0	0	2	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	a0004	138	1	0	0	1	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	a0005	138	1	1	0	0	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	a0006	138	1	0	0	0	0	1	copy fasta	CST11	chr20	23445412	23457876
CST1_chr20_23742562_23755935	0/0	a0001	141	287	52	48	161	5	21	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	1/1	a0002	141	81	1	22	35	9	12	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0003	141	77	23	11	26	4	13	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0004	141	15	13	2	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0005	141	6	5	1	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0006	141	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0007	141	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0008	141	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0009	141	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0010	141	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	a0011	141	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST2_chr20_23818769_23831729	1/1	a0001	141	424	82	78	209	16	37	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0002	141	34	0	6	21	0	7	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0003	141	5	5	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0004	141	4	4	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0005	90	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0006	141	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	a0007	90	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST3_chr20_23628657_23642955	1/1	a0001	146	344	83	67	153	14	25	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	a0002	146	74	13	9	29	2	21	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	a0003	146	2	0	0	2	0	0	copy fasta	CST3	chr20	23628657	23642955
CST4_chr20_23680640_23694038	1/1	a0001	141	431	76	78	213	14	48	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	a0002	141	9	9	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	a0003	141	6	5	0	1	0	0	copy fasta	CST4	chr20	23680640	23694038