JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CST4_chr20_23680640_23694038	0/0	a0004	141	3	3	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	a0005	141	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	a0006	141	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	a0007	112	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST5_chr20_23870934_23884748	0/1	a0001	142	242	69	50	93	7	22	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	1/0	a0002	142	196	21	31	112	9	22	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	a0003	142	4	3	1	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	a0004	142	1	0	0	1	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	a0005	142	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	a0006	142	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	a0007	142	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST6_chr11_66007008_66018505	1/1	a0001	149	409	93	70	184	16	44	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	a0002	149	4	0	0	4	0	0	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	a0003	149	1	1	0	0	0	0	copy fasta	CST6	chr11	66007008	66018505
CST7_chr20_24944269_24964928	1/1	a0001	145	345	90	70	126	16	41	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	a0002	1	2	1	0	1	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	a0003	145	1	1	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	a0004	145	1	0	0	1	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	a0005	145	1	0	0	0	0	1	copy fasta	CST7	chr20	24944269	24964928
CST8_chr20_23486117_23501010	1/1	a0001	142	430	89	80	201	16	42	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	a0002	142	6	6	0	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	a0003	142	3	3	0	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	a0004	142	1	0	0	1	0	0	copy fasta	CST8	chr20	23486117	23501010
CST9L_chr20_23559732_23573484	1/1	a0001	147	230	73	38	88	5	24	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	a0002	147	157	15	21	98	7	16	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	a0003	147	4	3	1	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	a0004	147	1	1	0	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9_chr20_23597410_23610917	1/0	a0001	159	217	78	41	66	2	29	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/1	a0002	159	193	8	35	125	12	12	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0003	159	3	3	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0004	159	2	2	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0005	159	2	0	0	0	2	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0006	159	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0007	159	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0008	86	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0009	159	1	1	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	a0010	159	1	0	0	0	0	1	copy fasta	CST9	chr20	23597410	23610917
CSTA_chr3_122320248_122346969	1/1	a0001	98	348	80	56	157	12	41	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	a0002	98	19	0	8	4	2	5	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	a0003	98	10	10	0	0	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	a0004	98	1	0	0	1	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTB_chr21_43768950_43781308	1/1	a0001	98	450	100	84	202	16	46	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	a0002	98	1	0	0	1	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	a0003	98	1	0	0	1	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTF1_chr20_56387645_56411362	1/1	a0001	431	422	98	78	184	14	46	copy fasta	CSTF1	chr20	56387645	56411362
CSTF2T_chr10_51690486_51704595	1/1	a0001	616	405	91	79	178	13	42	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0002	611	10	4	0	6	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0003	616	4	0	0	4	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0004	78	1	0	1	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0005	612	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595