JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSTF2T_chr10_51690486_51704595	0/0	a0006	616	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0007	616	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0008	616	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0009	616	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0010	616	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0011	616	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	a0012	616	1	0	0	0	1	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2_chrX_100815391_100846520	1/1	a0001	577	299	74	48	130	11	34	copy fasta	CSTF2	chrX	100815391	100846520
CSTF3_chr11_33079584_33166480	1/1	a0001	717	360	90	56	170	14	28	copy fasta	CSTF3	chr11	33079584	33166480
CSTL1_chr20_23434685_23449930	0/1	a0001	145	208	66	38	82	10	11	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	1/0	a0002	145	121	11	25	59	6	19	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0003	145	73	1	9	60	0	3	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0004	145	29	4	1	20	0	4	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0005	145	6	5	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0006	145	4	3	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0007	145	4	3	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0008	145	2	2	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0009	145	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0010	145	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0011	145	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0012	145	1	1	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	a0013	145	1	0	0	0	0	1	copy fasta	CSTL1	chr20	23434685	23449930
CSTPP1_chr11_46931761_47167247	1/1	a0001	331	218	70	53	64	4	25	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	a0002	331	2	1	1	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	a0003	331	1	0	0	0	0	1	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	a0004	117	1	0	0	1	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	a0005	331	1	1	0	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	a0006	331	1	0	0	1	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CS_chr12_56266699_56305330	1/1	a0001	466	314	80	69	121	14	28	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	a0002	95	1	0	1	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	a0003	466	1	0	0	1	0	0	copy fasta	CS	chr12	56266699	56305330
CT45A10_chrX_135876065_135898444	1/1	a0001	189	241	59	35	107	9	29	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0002	189	4	4	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0003	189	4	2	0	2	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0004	189	3	0	1	2	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0005	189	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0006	189	1	0	0	0	0	1	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0007	189	1	0	0	1	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0008	141	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0009	189	1	1	0	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A10_chrX_135876065_135898444	0/0	a0010	189	1	0	1	0	0	0	copy fasta	CT45A10	chrX	135876065	135898444
CT45A1_chrX_135708639_135728228	0/0	a0001	189	38	4	8	24	1	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	1/0	a0002	189	16	6	1	7	0	1	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	a0003	126	1	1	0	0	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	a0004	189	1	0	0	1	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A1_chrX_135708639_135728228	0/0	a0005	22	1	0	0	1	0	0	copy fasta	CT45A1	chrX	135708639	135728228
CT45A2_chrX_135806668_135825012	0/0	a0001	189	22	4	8	10	0	0	copy fasta	CT45A2	chrX	135806668	135825012
CT45A3_chrX_135755044_135773191	0/0	a0001	189	132	31	30	57	2	12	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	1/0	a0002	189	24	9	4	6	2	2	copy fasta	CT45A3	chrX	135755044	135773191
CT45A3_chrX_135755044_135773191	0/0	a0003	174	1	0	1	0	0	0	copy fasta	CT45A3	chrX	135755044	135773191