Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADAMTSL3_chr15_83649123_84044842	0/0	a0043	1691	1	0	0	1	0	0	copy fasta	ADAMTSL3	chr15	83649123	84044842
ADAMTSL4_chr1_150544408_150565933	1/0	a0001	1074	185	35	41	76	8	24	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/1	a0002	1074	179	39	22	92	6	19	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0003	1074	32	0	11	20	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0004	1074	10	9	1	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0005	1074	4	4	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0006	1074	3	1	0	0	0	2	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0007	1074	3	0	2	0	1	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0008	1074	2	0	1	0	1	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0009	1074	2	0	0	2	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0010	1074	2	2	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0011	1074	2	2	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0012	1074	2	2	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0013	1074	1	1	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0014	1074	1	0	1	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0015	1074	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0016	1074	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0017	1074	1	1	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0018	1074	1	1	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0019	1074	1	0	0	0	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0020	1074	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0021	951	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0022	1074	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0023	1074	1	1	0	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0024	1074	1	0	0	0	0	1	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0025	1074	1	0	1	0	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL4_chr1_150544408_150565933	0/0	a0026	1074	1	0	0	1	0	0	copy fasta	ADAMTSL4	chr1	150544408	150565933
ADAMTSL5_chr19_1500022_1518019	1/1	a0001	471	341	85	66	133	18	37	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0002	471	3	3	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0003	471	2	0	2	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0004	471	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0005	471	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0006	471	1	0	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0007	471	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0008	471	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	a0009	471	1	0	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAP1_chr7_892900_959680	0/1	a0001	374	13	4	4	0	0	4	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	1/0	a0002	374	1	0	0	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP2_chr17_30916945_30964322	1/1	a0001	381	280	88	72	68	16	34	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	a0002	381	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	a0003	109	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADARB1_chr21_45069580_45231560	1/1	a0001	701	347	80	62	151	10	42	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	a0002	701	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	a0003	701	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	a0004	701	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB2_chr10_1172313_1742525	0/0	a0001	739	51	28	5	13	1	4	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0002	739	44	14	4	18	1	7	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0003	739	2	0	0	2	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0004	739	2	1	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0005	739	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525