JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTAG2_chrX_154646977_154658579	0/0	a0003	180	11	10	1	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0004	180	8	6	0	2	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/1	a0005	180	4	0	0	1	0	2	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0006	180	2	2	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0007	180	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0008	180	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0009	180	1	0	0	0	0	1	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0010	180	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	a0011	89	1	0	0	1	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAGE15_chr7_143566801_143579387	0/0	a0001	777	46	2	10	23	1	10	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0002	777	36	5	3	28	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0003	777	23	0	0	21	0	2	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0004	777	14	2	2	6	3	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0005	777	13	3	5	2	0	3	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0006	777	7	1	2	4	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0007	777	7	0	5	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0008	777	6	6	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0009	777	6	5	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0010	777	5	0	5	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0011	777	4	0	2	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0012	777	3	0	1	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0013	777	3	0	0	2	1	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0014	777	2	0	0	0	2	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0015	777	2	2	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0016	777	2	2	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0017	777	2	0	2	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0018	777	2	0	0	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0019	777	2	0	0	0	0	2	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0020	777	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0021	777	2	0	0	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0022	777	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0023	777	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0024	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0025	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0026	777	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0027	777	1	0	0	0	1	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0028	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0029	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0030	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0031	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0032	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0033	777	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0034	777	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0035	777	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0036	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0037	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0038	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0039	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0040	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0041	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387