JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTAGE15_chr7_143566801_143579387	0/0	a0042	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0043	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0044	777	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0045	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0046	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0047	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0048	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0049	777	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0050	777	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	a0051	777	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE1_chr18_22408599_22422915	1/1	a0001	745	359	58	43	211	10	35	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0002	745	62	20	12	14	5	11	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0003	745	15	0	14	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0004	745	9	7	0	2	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0005	745	8	8	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0006	745	6	3	2	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0007	745	6	0	5	0	1	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0008	745	3	0	0	3	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0009	745	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0010	745	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0011	745	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0012	745	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0013	745	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0014	745	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0015	745	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0016	745	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0017	745	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0018	745	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0019	745	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	a0020	745	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE4_chr7_144178466_144191080	0/0	a0000	0	5	0	3	0	2	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0001	777	76	2	6	66	1	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0002	777	72	0	15	48	2	7	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0003	777	55	9	8	26	1	11	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0004	777	25	5	5	3	0	12	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0005	777	14	13	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0006	777	11	6	2	0	1	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0007	777	10	0	4	5	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0008	777	9	0	5	1	2	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0009	777	8	0	1	7	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0010	777	8	0	7	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0011	777	8	0	4	2	0	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0012	777	5	0	2	1	0	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0013	777	4	4	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0014	777	4	3	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0015	777	4	4	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0016	777	4	0	0	4	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0017	777	4	0	2	1	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0018	777	4	0	0	2	0	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0019	777	3	3	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080