JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTAGE4_chr7_144178466_144191080	0/0	a0020	777	3	0	0	3	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0021	777	2	0	2	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0022	777	2	2	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0023	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0024	777	2	2	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0025	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0026	777	2	2	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0027	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0028	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0029	777	2	1	0	0	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0030	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0031	777	2	0	0	2	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0032	777	2	0	0	0	1	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0033	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0034	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0035	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0036	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0037	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0038	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0039	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0040	777	1	0	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0041	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0042	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0043	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0044	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0045	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0046	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0047	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0048	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0049	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0050	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0051	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0052	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0053	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0054	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0055	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0056	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0057	777	1	0	0	0	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0058	777	1	0	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0059	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0060	777	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0061	777	1	0	0	0	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0062	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0063	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	a0064	777	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE6_chr7_143750089_143762696	0/0	a0001	777	36	5	5	14	3	9	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0002	777	31	3	8	19	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0003	777	16	6	5	2	1	2	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0004	777	12	0	0	12	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0005	777	7	0	0	7	0	0	copy fasta	CTAGE6	chr7	143750089	143762696