JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTAGE6_chr7_143750089_143762696	0/0	a0056	777	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0057	777	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0058	777	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	a0059	777	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE8_chr7_144261674_144274288	0/0	a0001	777	20	1	1	18	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0002	777	13	0	2	6	0	5	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0003	777	11	1	0	9	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0004	777	8	0	1	3	2	2	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0005	777	6	0	2	2	2	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0006	777	5	2	1	1	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0007	777	4	0	1	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0008	777	4	0	0	4	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0009	777	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0010	777	3	0	1	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0011	777	3	1	0	0	1	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0012	777	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0013	777	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0014	777	3	0	0	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0015	777	3	0	0	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0016	777	3	2	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0017	777	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0018	777	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0019	777	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0020	777	2	1	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0021	777	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0022	777	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0023	777	2	0	1	0	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0024	777	2	0	1	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0025	777	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0026	777	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0027	777	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0028	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0029	777	1	0	0	0	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0030	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0031	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0032	777	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0033	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0034	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0035	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0036	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0037	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0038	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0039	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0040	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0041	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0042	777	1	0	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0043	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0044	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0045	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0046	777	1	0	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288