JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTAGE8_chr7_144261674_144274288	0/0	a0047	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0048	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0049	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0050	777	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0051	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0052	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0053	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0054	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0055	777	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0056	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0057	777	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0058	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0059	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	a0060	777	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE9_chr6_131703441_131716017	1/1	a0001	777	246	30	57	116	13	28	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0002	777	110	26	7	68	1	8	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0003	777	28	26	1	0	0	1	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0004	777	10	5	1	1	2	1	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0005	777	3	3	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0006	777	3	3	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0007	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0008	777	1	0	0	1	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0009	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0010	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0011	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0012	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0013	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	a0014	777	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTBP1_chr4_1206445_1254130	1/1	a0001	429	422	94	76	190	14	46	copy fasta	CTBP1	chr4	1206445	1254130
CTBP2_chr10_124979317_125033071	0/1	a0001	985	116	18	20	58	4	15	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0002	985	84	9	15	49	7	4	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0003	992	57	14	23	16	2	2	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	1/0	a0004	985	54	19	6	17	0	11	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0005	985	20	7	3	8	1	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0006	985	15	12	3	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0007	985	6	5	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0008	985	5	5	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0009	985	3	0	0	3	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0010	992	2	0	2	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0011	985	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0012	985	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0013	24	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0014	985	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0015	985	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0016	985	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0017	179	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0018	992	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0019	992	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0020	985	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0021	985	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071