JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTBP2_chr10_124979317_125033071	0/0	a0022	985	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0023	985	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0024	985	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0025	985	1	0	0	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	a0026	985	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBS_chr1_84544611_84579440	1/1	a0001	385	207	30	39	115	7	14	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0002	382	75	39	12	14	4	6	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0003	382	33	9	6	6	1	11	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0004	388	8	6	2	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0005	385	5	0	0	5	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0006	382	4	2	1	0	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0007	4	2	0	0	2	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0008	385	2	1	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0009	385	2	0	0	0	0	2	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0010	385	1	0	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	a0011	382	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTC1_chr17_8219815_8253056	0/1	a0001	1217	180	52	32	62	10	23	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0002	1217	173	14	27	120	2	10	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0003	1217	21	12	8	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	1/0	a0004	1217	6	0	2	0	0	3	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0005	1217	6	6	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0006	1217	4	4	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0007	1217	2	0	0	0	0	2	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0008	1217	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0009	1217	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0010	1217	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0011	1201	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0012	1217	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0013	1217	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0014	1217	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0015	1217	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0016	1217	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	a0017	1217	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTCFL_chr20_57492166_57530140	0/0	a0001	663	186	68	27	74	6	11	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/1	a0002	663	110	7	14	64	5	19	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	1/0	a0003	663	93	4	19	47	2	20	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0004	663	6	4	2	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0005	663	5	4	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0006	663	5	0	2	0	3	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0007	663	4	4	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0008	663	3	0	2	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0009	663	2	2	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0010	663	2	2	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0011	663	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0012	663	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0013	663	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0014	663	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0015	663	1	0	0	0	1	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0016	663	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	a0017	663	1	0	0	0	1	0	copy fasta	CTCFL	chr20	57492166	57530140