JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTCFL_chr20_57492166_57530140	0/0	a0018	663	1	0	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCF_chr16_67557526_67644177	1/1	a0001	727	168	78	36	26	8	18	copy fasta	CTCF	chr16	67557526	67644177
CTDNEP1_chr17_7238591_7256734	1/1	a0001	244	353	96	58	161	14	22	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	a0002	244	45	0	14	15	4	12	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDP1_chr18_79674803_79759503	0/1	a0001	961	195	44	41	72	7	30	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	1/0	a0002	961	90	25	13	39	4	8	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0003	962	36	0	7	28	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0004	961	33	0	5	23	3	2	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0005	961	6	6	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0006	961	5	0	3	2	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0007	961	2	2	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0008	961	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0009	961	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0010	961	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0011	961	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0012	961	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0013	961	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0014	962	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0015	961	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0016	961	1	0	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0017	962	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	a0018	961	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDSP1_chr2_218394868_218410941	1/1	a0001	261	408	87	77	179	16	47	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	a0002	261	13	10	2	0	0	1	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	a0003	261	1	0	1	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	a0004	261	1	1	0	0	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP1_chr2_218394868_218410941	0/0	a0005	261	1	0	0	1	0	0	copy fasta	CTDSP1	chr2	218394868	218410941
CTDSP2_chr12_57814927_57851729	1/1	a0001	271	345	86	72	132	12	41	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSP2_chr12_57814927_57851729	0/0	a0002	271	1	0	0	0	0	1	copy fasta	CTDSP2	chr12	57814927	57851729
CTDSPL2_chr15_44422629_44534038	1/1	a0001	466	230	77	38	89	2	22	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	a0002	466	2	2	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	a0003	466	1	1	0	0	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL2_chr15_44422629_44534038	0/0	a0004	466	1	0	0	1	0	0	copy fasta	CTDSPL2	chr15	44422629	44534038
CTDSPL_chr3_37856880_37989469	1/1	a0001	276	162	70	34	30	8	18	copy fasta	CTDSPL	chr3	37856880	37989469
CTDSPL_chr3_37856880_37989469	0/0	a0002	276	4	4	0	0	0	0	copy fasta	CTDSPL	chr3	37856880	37989469
CTF1_chr16_30891614_30908547	1/1	a0001	201	307	92	70	94	16	33	copy fasta	CTF1	chr16	30891614	30908547
CTF1_chr16_30891614_30908547	0/0	a0002	201	1	0	0	0	0	1	copy fasta	CTF1	chr16	30891614	30908547
CTHRC1_chr8_103366538_103387989	0/0	a0000	0	1	0	0	0	0	1	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	1/1	a0001	243	404	89	70	186	16	41	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	a0002	243	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	a0003	243	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTHRC1_chr8_103366538_103387989	0/0	a0004	243	1	1	0	0	0	0	copy fasta	CTHRC1	chr8	103366538	103387989
CTH_chr1_70406268_70444851	1/0	a0001	405	333	85	46	159	14	28	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/1	a0002	405	89	7	28	43	4	6	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	a0003	405	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTH_chr1_70406268_70444851	0/0	a0004	405	1	1	0	0	0	0	copy fasta	CTH	chr1	70406268	70444851
CTIF_chr18_48534031_48868217	1/1	a0001	598	132	77	20	16	0	17	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	a0002	598	8	2	2	3	0	1	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	a0003	598	1	1	0	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	a0004	598	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217