JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTIF_chr18_48534031_48868217	0/0	a0005	598	1	0	0	1	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTIF_chr18_48534031_48868217	0/0	a0006	598	1	0	1	0	0	0	copy fasta	CTIF	chr18	48534031	48868217
CTLA4_chr2_203862771_203878965	1/0	a0001	223	228	59	34	96	12	26	copy fasta	CTLA4	chr2	203862771	203878965
CTLA4_chr2_203862771_203878965	0/1	a0002	223	192	31	34	106	4	16	copy fasta	CTLA4	chr2	203862771	203878965
CTNNA1_chr5_138748425_138940034	1/1	a0001	906	175	68	42	29	10	24	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	a0002	906	2	0	0	2	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	a0003	906	2	2	0	0	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA1_chr5_138748425_138940034	0/0	a0004	906	1	0	0	1	0	0	copy fasta	CTNNA1	chr5	138748425	138940034
CTNNA2_chr2_79508051_80653780	0/0	a0001	953	63	43	10	4	0	6	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	a0002	953	4	4	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA2_chr2_79508051_80653780	0/0	a0003	953	1	1	0	0	0	0	copy fasta	CTNNA2	chr2	79508051	80653780
CTNNA3_chr10_65907523_67701195	0/0	a0001	895	34	25	4	5	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	a0002	895	9	4	2	3	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	a0003	895	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	a0004	895	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNA3_chr10_65907523_67701195	0/0	a0005	895	1	1	0	0	0	0	copy fasta	CTNNA3	chr10	65907523	67701195
CTNNAL1_chr9_108937577_109018499	1/1	a0001	734	324	82	48	150	10	32	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0002	734	81	1	21	50	4	5	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0003	734	9	7	2	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0004	734	2	0	0	0	0	2	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0005	734	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0006	734	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0007	734	1	0	1	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	a0008	734	1	0	0	0	0	1	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNB1_chr3_41194505_41245443	1/1	a0001	781	342	96	56	148	12	28	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNBIP1_chr1_9843276_9915269	1/1	a0001	81	309	92	56	114	12	33	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	a0002	81	1	0	0	0	0	1	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBL1_chr20_37689030_37877118	1/1	a0001	563	266	84	54	84	12	30	copy fasta	CTNNBL1	chr20	37689030	37877118
CTNND1_chr11_57756802_57824540	1/1	a0001	968	262	58	63	89	14	36	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0002	968	19	18	1	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0003	968	2	0	0	2	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0004	968	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0005	968	1	0	0	1	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0006	968	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0007	968	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	a0008	1004	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND2_chr5_10966836_11909446	1/1	a0001	1225	25	19	2	2	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	a0002	1225	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNS_chr17_3631760_3668103	0/1	a0001	367	299	41	63	141	13	40	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	1/0	a0002	367	63	32	9	16	1	4	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0003	367	5	5	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0004	367	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0005	367	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0006	367	1	0	1	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0007	367	1	0	0	1	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	a0008	367	1	0	0	0	0	1	copy fasta	CTNS	chr17	3631760	3668103
CTPS1_chr1_40974696_41017565	1/1	a0001	591	386	87	69	176	16	36	copy fasta	CTPS1	chr1	40974696	41017565
CTPS1_chr1_40974696_41017565	0/0	a0002	591	2	1	1	0	0	0	copy fasta	CTPS1	chr1	40974696	41017565
CTPS2_chrX_16582999_16717669	1/1	a0001	586	225	60	46	90	7	20	copy fasta	CTPS2	chrX	16582999	16717669
CTPS2_chrX_16582999_16717669	0/0	a0002	256	1	0	0	1	0	0	copy fasta	CTPS2	chrX	16582999	16717669