Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABAT_chr16_8669617_8789570	0/0	a0006	500	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABCA10_chr17_69143007_69233824	1/0	a0001	1543	96	17	11	54	3	10	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/1	a0002	1543	82	2	19	44	3	13	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0003	1543	54	12	14	15	7	6	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0004	459	42	4	15	17	1	5	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0005	260	18	17	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0006	453	13	10	3	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0007	458	9	6	3	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0008	1543	6	6	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0009	1543	3	2	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0010	1543	3	3	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0011	1543	3	0	0	3	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0012	1543	3	0	0	3	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0013	1543	2	2	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0014	1543	2	0	0	2	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0015	171	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0016	1543	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0017	1543	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0018	1543	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0019	1543	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0020	1543	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0021	1543	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0022	1543	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0023	1543	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0024	1543	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0025	453	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	a0026	1543	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA12_chr2_214926542_215143626	0/1	a0001	2595	130	36	28	47	4	14	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0002	2595	26	25	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0003	2595	10	10	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0004	2595	6	5	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0005	2595	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0006	2595	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0007	2595	3	0	3	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0008	2595	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0009	2595	2	0	2	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0010	2595	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0011	2595	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0012	2595	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	1/0	a0013	2595	1	0	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0014	2595	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0015	2595	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0016	2481	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0017	2595	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0018	2595	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0019	2595	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0020	2595	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0021	2595	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	a0022	2595	1	0	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA13_chr7_48166458_48652497	0/0	a0001	5058	21	3	3	11	0	4	copy fasta	ABCA13	chr7	48166458	48652497