Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADARB2_chr10_1172313_1742525	0/0	a0006	739	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0007	739	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0008	739	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0009	739	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0010	739	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	a0011	739	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADAR_chr1_154577057_154613186	0/1	a0001	1226	257	25	58	134	10	29	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0002	1226	138	48	18	54	5	13	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0003	1226	7	4	3	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0004	1226	5	5	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	1/0	a0005	1226	4	3	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0006	1226	1	0	0	0	1	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0007	1226	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0008	892	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0009	1226	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	a0010	1226	1	0	1	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAT1_chr16_75591868_75628281	1/0	a0001	502	120	25	37	26	11	20	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0002	502	109	1	22	72	1	13	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/1	a0003	502	70	30	10	25	1	3	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0004	502	17	13	2	1	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0005	502	14	11	3	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0006	502	4	0	0	4	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0007	502	4	0	0	4	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0008	502	3	0	0	3	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0009	502	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0010	502	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0011	502	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	a0012	502	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT2_chr6_143417832_143455695	1/1	a0001	191	307	67	68	124	12	34	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	a0002	191	14	14	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	a0003	191	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT3_chr19_1900399_1918447	1/1	a0001	367	431	89	80	198	18	44	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0002	367	6	6	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0003	367	1	0	1	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0004	367	1	0	1	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0005	367	1	0	0	0	0	1	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0006	367	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	a0007	367	1	0	0	0	0	1	copy fasta	ADAT3	chr19	1900399	1918447
ADA_chr20_44614522_44656699	1/1	a0001	363	297	84	63	101	11	36	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0002	363	12	4	3	1	3	1	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0003	363	10	0	1	6	0	3	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0004	363	2	2	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0005	363	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0006	363	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0007	363	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0008	363	1	0	1	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0009	363	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0010	363	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	a0011	363	1	1	0	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADCK1_chr14_77795109_77940014	1/1	a0001	523	281	86	47	99	18	29	copy fasta	ADCK1	chr14	77795109	77940014