JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTSW_chr11_65874837_65888741	1/0	a0002	376	18	15	2	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0003	376	1	0	0	0	0	1	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0004	376	1	1	0	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0005	376	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0006	376	1	1	0	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0007	376	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0008	376	1	0	1	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	a0009	376	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSZ_chr20_58990185_59012254	1/1	a0001	303	426	89	78	191	16	50	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0002	303	4	4	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0003	303	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0004	303	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0005	303	1	0	0	1	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0006	303	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0007	303	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	a0008	303	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTTNBP2NL_chr1_112391214_112466164	1/1	a0001	639	306	78	53	144	4	25	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0002	639	9	8	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0003	639	5	5	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0004	639	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0005	639	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0006	639	1	0	0	0	0	1	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	a0007	639	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2_chr7_117705651_117878441	1/1	a0001	1663	148	60	37	31	3	15	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0002	1663	4	2	2	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0003	1663	3	1	1	0	1	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0004	1663	2	1	1	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0005	1663	1	0	1	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0006	1663	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0007	1663	1	0	0	1	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0008	1663	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0009	1663	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0010	1663	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	a0011	1663	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTN_chr11_70393529_70441575	1/1	a0001	550	300	77	60	111	16	34	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	a0002	550	18	18	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	a0003	550	2	0	0	2	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	a0004	550	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	a0005	550	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTU1_chr19_51092606_51113409	0/0	a0000	0	14	2	2	10	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	1/1	a0001	348	336	83	64	146	8	33	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0002	348	72	9	6	47	4	6	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0003	348	25	0	5	11	4	5	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0004	348	3	0	3	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0005	348	2	0	0	2	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0006	348	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	a0007	348	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU2_chr16_88701503_88720396	0/1	a0001	371	157	22	27	94	3	10	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0002	371	125	7	34	55	9	20	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0003	371	46	25	6	11	1	3	copy fasta	CTU2	chr16	88701503	88720396