JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CTU2_chr16_88701503_88720396	1/0	a0004	515	42	12	8	11	1	9	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0005	515	17	17	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0006	515	7	0	4	0	2	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0007	515	5	4	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0008	371	4	3	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0009	371	3	1	2	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0010	515	2	2	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0011	515	2	2	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0012	199	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0013	371	1	0	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0014	515	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0015	371	1	0	0	0	0	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0016	515	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0017	371	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0018	371	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	a0019	515	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTXN1_chr19_7919491_7931135	1/1	a0001	82	424	92	84	180	16	50	copy fasta	CTXN1	chr19	7919491	7931135
CTXN2_chr15_48186665_48208758	1/1	a0001	81	307	84	32	160	2	27	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	a0002	81	1	0	0	0	0	1	copy fasta	CTXN2	chr15	48186665	48208758
CTXN3_chr5_127644082_127663630	0/1	a0001	81	232	53	38	99	13	28	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	1/0	a0002	81	160	27	33	82	4	13	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	a0003	81	79	15	5	53	1	5	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	a0004	81	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXND1_chr15_80190481_80257213	1/1	a0001	59	396	90	74	176	6	48	copy fasta	CTXND1	chr15	80190481	80257213
CTXND2_chr1_150882136_150918292	1/1	a0001	55	372	90	56	164	18	42	copy fasta	CTXND2	chr1	150882136	150918292
CUBN_chr10_16818966_17134811	0/0	a0001	3623	17	2	3	8	0	4	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0002	3623	13	0	3	6	1	3	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0003	3623	12	5	0	6	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0004	3623	8	1	5	2	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0005	3623	5	0	1	0	1	3	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0006	3623	5	2	0	3	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0007	3623	4	0	1	3	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0008	3623	4	1	1	2	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0009	3623	3	0	1	2	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0010	3623	3	0	3	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0011	3623	3	3	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0012	3623	2	0	0	0	0	2	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0013	3623	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0014	3623	2	0	0	1	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0015	3623	2	0	0	1	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0016	3623	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0017	3623	2	0	1	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0018	3623	2	0	2	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0019	3623	2	1	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0020	3623	2	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0021	3623	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0022	3623	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0023	3623	2	0	0	1	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0024	3623	2	0	1	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0025	3623	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811