JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CUBN_chr10_16818966_17134811	0/0	a0076	3623	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0077	3623	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0078	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0079	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0080	3623	1	0	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0081	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0082	1562	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0083	3623	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0084	3623	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0085	3623	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0086	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0087	3623	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0088	3623	1	0	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0089	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0090	3623	1	0	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0091	3623	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0092	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0093	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0094	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0095	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0096	3623	1	0	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0097	3623	1	0	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0098	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0099	3623	1	0	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0100	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0101	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0102	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0103	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0104	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0105	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0106	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0107	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0108	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0109	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0110	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0111	3623	1	0	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	a0112	3623	1	1	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUEDC1_chr17_57856243_57960412	1/1	a0001	386	176	75	40	21	9	29	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	a0002	386	19	1	7	2	3	6	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	a0003	386	13	12	1	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	a0004	386	2	2	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	a0005	386	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	a0006	386	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC2_chr10_102418249_102437574	1/1	a0001	287	388	84	76	168	14	44	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	a0002	152	2	0	0	2	0	0	copy fasta	CUEDC2	chr10	102418249	102437574
CUL1_chr7_148693903_148806110	1/1	a0001	776	338	92	70	132	10	32	copy fasta	CUL1	chr7	148693903	148806110
CUL2_chr10_35003551_35095341	1/1	a0001	745	299	84	60	106	10	37	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	a0002	745	1	0	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL3_chr2_224465150_224590363	1/1	a0001	768	314	91	46	141	12	22	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	a0002	768	68	1	10	43	2	12	copy fasta	CUL3	chr2	224465150	224590363