JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CUL4A_chr13_113204613_113272108	1/1	a0001	759	299	81	53	122	16	25	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	a0002	759	91	0	21	53	2	15	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	a0003	759	4	0	0	4	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	a0004	759	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	a0005	759	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4B_chrX_120518858_120565962	1/1	a0001	895	277	64	48	128	11	24	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	a0002	40	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL5_chr11_108003898_108112761	1/1	a0001	780	311	90	53	120	10	36	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	a0002	780	1	0	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL7_chr6_43032617_43058851	0/1	a0001	1698	263	72	53	97	12	28	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0002	1698	9	7	2	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0003	1698	4	0	0	4	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0004	1698	4	0	0	4	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0005	1698	4	4	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0006	1698	2	2	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	1/0	a0007	1698	2	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0008	1698	2	0	2	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0009	1698	2	0	0	2	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0010	1698	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0011	1698	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0012	1698	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0013	1698	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0014	1213	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0015	1698	1	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0016	1698	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0017	1698	1	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0018	1698	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	a0019	1698	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL9_chr6_43177196_43229587	0/1	a0001	2517	135	50	17	54	2	11	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	1/0	a0002	2517	108	24	21	47	5	10	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0003	2516	8	5	1	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0004	2517	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0005	2517	2	0	0	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0006	2517	2	1	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0007	2517	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0008	2517	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0009	2517	2	0	0	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0010	2517	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0011	2517	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0012	2517	1	0	0	0	1	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0013	2517	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0014	2517	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0015	2517	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0016	2517	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0017	2517	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0018	2517	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0019	2517	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0020	2517	1	0	0	0	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0021	2517	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	a0022	2517	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587