JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CUTA_chr6_33411442_33423107	0/1	a0001	179	330	87	69	125	14	34	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0002	179	3	3	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0003	156	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0004	179	1	0	1	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0005	179	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0006	179	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0007	179	1	1	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	a0008	179	1	1	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTC_chr10_99727234_99761134	1/1	a0001	273	410	86	78	184	14	46	copy fasta	CUTC	chr10	99727234	99761134
CUX1_chr7_101811007_102288958	0/0	a0001	678	73	36	13	11	3	10	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	1/1	a0002	678	51	26	12	5	1	5	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	a0003	678	4	4	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	a0004	678	2	0	2	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	a0005	678	1	0	0	0	0	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	a0006	678	1	0	1	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101812626_102263233	1/1	a0001	1505	128	62	29	13	4	18	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0002	1505	3	3	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0003	1505	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0004	1505	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0005	1510	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0006	1505	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	a0007	1505	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX2_chr12_111029165_111355554	0/0	a0001	1486	92	75	9	2	0	6	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	a0002	1486	3	1	0	0	0	2	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	a0003	1486	1	0	1	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	1/0	a0004	1486	1	0	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	a0005	1486	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	a0006	1486	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/1	a0007	1486	1	0	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUZD1_chr10_122827158_122850857	1/1	a0001	607	392	78	76	177	17	42	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0002	607	11	0	0	10	0	1	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0003	607	6	6	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0004	607	3	0	0	0	0	3	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0005	607	3	2	1	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0006	607	2	0	0	2	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0007	607	1	1	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0008	607	1	0	0	1	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0009	607	1	0	1	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0010	607	1	0	0	0	1	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	a0011	607	1	1	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CWC15_chr11_94957620_94978556	1/1	a0001	229	410	96	74	184	12	42	copy fasta	CWC15	chr11	94957620	94978556
CWC22_chr2_179939876_180012297	0/1	a0001	908	186	52	24	82	8	19	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0002	908	82	14	17	44	1	6	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0003	908	64	4	8	48	1	3	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	1/0	a0004	908	29	13	8	0	3	4	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0005	908	4	4	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0006	908	3	0	0	2	0	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0007	908	2	0	2	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0008	908	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0009	908	1	0	1	0	0	0	copy fasta	CWC22	chr2	179939876	180012297