JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CWC22_chr2_179939876_180012297	0/0	a0010	908	1	0	0	0	0	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0011	529	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0012	908	1	0	0	0	1	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	a0013	908	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC25_chr17_38795441_38830321	0/1	a0001	425	382	91	66	174	12	38	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	a0002	425	1	1	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC27_chr5_64763930_65023750	1/1	a0001	472	150	34	29	62	10	13	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	a0002	472	108	34	11	46	4	13	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	a0003	472	1	1	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	a0004	472	1	1	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWF19L1_chr10_100227298_100272638	1/0	a0001	538	245	38	54	125	5	22	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0002	538	67	39	3	22	0	3	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0003	538	36	8	5	18	1	4	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0004	538	5	0	0	5	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/1	a0005	538	2	0	0	0	0	1	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0006	538	2	2	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0007	538	2	0	0	2	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0008	538	2	0	0	0	2	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0009	538	2	2	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L1_chr10_100227298_100272638	0/0	a0010	538	1	1	0	0	0	0	copy fasta	CWF19L1	chr10	100227298	100272638
CWF19L2_chr11_107321360_107462825	1/1	a0001	894	204	51	37	82	6	26	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0002	894	92	15	12	49	5	11	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0003	894	45	1	2	40	1	1	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0004	894	27	13	12	0	2	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0005	894	6	0	0	6	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0006	894	5	5	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0007	894	3	2	1	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0008	894	3	2	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0009	894	2	0	0	2	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0010	894	2	2	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0011	894	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0012	894	1	1	0	0	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWF19L2_chr11_107321360_107462825	0/0	a0013	894	1	0	0	1	0	0	copy fasta	CWF19L2	chr11	107321360	107462825
CWH43_chr4_48981275_49067079	1/1	a0001	699	126	48	6	55	1	14	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0002	699	85	10	26	33	7	9	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0003	699	67	7	18	29	6	7	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0004	532	9	0	5	1	2	1	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0005	699	3	0	3	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0006	699	2	2	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0007	699	2	0	2	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0008	699	1	0	0	0	0	1	copy fasta	CWH43	chr4	48981275	49067079
CWH43_chr4_48981275_49067079	0/0	a0009	699	1	1	0	0	0	0	copy fasta	CWH43	chr4	48981275	49067079
CX3CL1_chr16_57367490_57390044	1/1	a0001	397	423	95	70	197	15	44	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0002	397	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0003	397	1	0	1	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0004	397	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0005	397	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0006	397	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0007	397	1	0	1	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	a0008	397	1	0	0	0	1	0	copy fasta	CX3CL1	chr16	57367490	57390044